View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_9 (Length: 561)
Name: NF5916_low_9
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Original strand, 21248175 - 21248710
Alignment:
| Q |
13 |
aatattaaacaacttagtaacaatagtagcaacccctctaaagaaaataggtctactcatcccacaaagaaccttttcaagcctctcaactctaacccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
21248175 |
aatattaaacaacttagtaacaatagtagcaacccctctaaagaaaataggtctactcattccacaaagacccttttcaagcctctcaactctaacccaa |
21248274 |
T |
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| Q |
113 |
ctctcatgtccaaaaccactcttttcaacacaagaaaccaccccgtcactcttttcacc---atcatcaccatcaccatcactttgaccataatcataca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
21248275 |
ctctcatgtccaaaaccactcttttcaacacaagaaacaaccccatcacccttttcaccaccatcatcaccatcaccatcacttccaccataatcataca |
21248374 |
T |
|
| Q |
210 |
aattcttaggattaaaaacaacatcaacaccaccaggaacattgataagctttttcaaatcaccttgaaaatcagaagggtaagtggaaagatcttcatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21248375 |
aattcttaggattaaaaacaacatcaacaccaccaggaacattgataagctttttcaaatcaccttgaaaatcagaagggtaagtggaaagatcttcatt |
21248474 |
T |
|
| Q |
310 |
aggtgaaaactgacctgggttaacatagattgaaacaacaataagattggcgtgtttgtgagcttgtgttatgagagaaagatgaccttgatgaaggtaa |
409 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
21248475 |
aggtgaaaactgaccagggttaacgtagattgaaacaacaatgagattggcgtgtttgtgagcttgagttatgagagaaaggtgaccttgatgaaggtaa |
21248574 |
T |
|
| Q |
410 |
cccattgtgggaacaagtgcaatgagtttggattgggatctcattgttcttgaccaatttctcatttgggttttgtctctgattattatgggttcttttt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21248575 |
cccattgtgggaacaagtgcaatgagtttggattgggatctcattgttcttgaccagtttctcatttgggttttgtctctgattattatgggttcttttt |
21248674 |
T |
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| Q |
510 |
gtgccatttgaatcagaattcaactgggttttgttg |
545 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
21248675 |
gtgccatttgaatcagaattcaactgggtttcgttg |
21248710 |
T |
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