View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917-Insertion-1 (Length: 1080)
Name: NF5917-Insertion-1
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 274 - 1054
Target Start/End: Complemental strand, 33739588 - 33738816
Alignment:
| Q |
274 |
catggagggtactgttatgttagttcaagtttaggttttggtgtgtaatggaatttgggtataattattatcaccatagatagtcgtagcagcagtagtg |
373 |
Q |
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| T |
33739588 |
catggagggtactgttatgttagttcaagtttaggttttggtgtgtaatggaatttgggtataattattatcaccatagatagtagtagtagtagtagtg |
33739489 |
T |
|
| Q |
374 |
gtacgcctgtgactcttggttttgttttgtttatgtttctcttgaaaatcctcttgtcatgtgtatgtttactggattaattaattaatggtgttttatg |
473 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33739488 |
gtacacctatgactcttggttttgttttgtttatgtttctcttgaaaatcctcttgtcatgtgtatgtttactggattaattaattaatggtgttttatg |
33739389 |
T |
|
| Q |
474 |
actaatctgtttcattgattctatttacctggactttagtctttcaattcaaacttaaaagttatgttagtgctgttttctcatgctctaaatgatttgt |
573 |
Q |
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| T |
33739388 |
actaatctgtttcattgattctatttacctggactttagtctttcaatttaaacttaaaagttatgttattgctgttttctcatgctctaaatgatttgg |
33739289 |
T |
|
| Q |
574 |
aattttcttggcactttccttcattgtcaaacaggtaatgataatgtgaccttgtgggatacttcctcattactactgcaagtt----gtatatgttcca |
669 |
Q |
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| T |
33739288 |
atttttcttggcactttccttcattgtcaaacaggtaatgataatgtgaccttgtgggatacttcctcattactactgcaagttgtatgtatatgttcca |
33739189 |
T |
|
| Q |
670 |
actttgagtaactaactttcctttgttagaccaaagtttgtcttttgaccggccttcctaatcaatgtttggttgtaaagcctaactcaactgataatga |
769 |
Q |
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| T |
33739188 |
actttgagtaactaactttcctttgttagaccaaagtttgtcttttgaccggccctcctaatcaaagtttggttgtaaagcttaactcaactaataat-a |
33739090 |
T |
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| Q |
770 |
taatgctgaaattattagatttgatgtcttcatccgataccttgcggtatgtgtgtgtttcaacggtctttaccactttgtctacaaacaaaagaaaaat |
869 |
Q |
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| ||||||| |||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33739089 |
t-----tgaaattgttagatttgatgtcttcacttgagaccttacggtatgtgtgagtttcaacggtctttaccactttgtctacaaacaaaagaaaaat |
33738995 |
T |
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| Q |
870 |
cttactaaatgaga-ttttatagtactaaaatagtgttttattat-aataattaattaatttccttc-acttgatgaatatctttgagttgtatagtaat |
966 |
Q |
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| T |
33738994 |
ct---taaatgagagttttatagtactaaaatagtgtttttatataaataattaattaatttccttcaacttgatgaatatctttgagttgtatagt-ac |
33738899 |
T |
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| Q |
967 |
tccaatggtgggatgatggaatacaatttttacatgcgttaaatggatggtcatggtactagcagcaggc-acgatgaattaaatgcga |
1054 |
Q |
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| T |
33738898 |
tccaatg--tggatgat-gaataca--ttttacatgcgttagatggat-gtcatgggaccagcagcaggcaacaatgaattaaatgcga |
33738816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 33739862 - 33739647
Alignment:
| Q |
9 |
gatttgggcttgggcttgaagaaatgggatttgggattggaagaacaggttgggcttttccaggaatgatggatggtgttcctgtcgtgtcttctggtgt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33739862 |
gatttgggcttgggcttgaagaaatgggatttgggattggaagaacaggttgggcttttccaggaatgatggatggtgttcctgttgtgtcttctggtgt |
33739763 |
T |
|
| Q |
109 |
tgttggaaacacgtggcagttagaaggtggtgaaggtggttttgttggtgctggtgattgtttctcttggcctggacttgctatttcaacaccagtaaat |
208 |
Q |
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| T |
33739762 |
tgttggaaacacgtggcagttagaaggtggtgaaggtggttttgttggtgctggtgattgtttctcttggcctggacttgctatttcaacaccagtaaat |
33739663 |
T |
|
| Q |
209 |
ggtctcaaatgaactc |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
33739662 |
ggtctcaaatgaactc |
33739647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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