View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5917-Insertion-2 (Length: 923)
Name: NF5917-Insertion-2
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917-Insertion-2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 9 - 910
Target Start/End: Original strand, 36162092 - 36162994
Alignment:
| Q |
9 |
gatttaagttaagaacgtcgaaaatgtcacgagttatgttaaacataaaatgcaagggatggtttaagttctgagaacaggttttagcttcatattatta |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162092 |
gatttaagttaagtacgtcgaaaatgtcacgagttatgttaaacataaaatgcaagggatggtttaagttctgagaacaggttttagcttcatattatta |
36162191 |
T |
|
| Q |
109 |
ttcataaaagtgtaggttgatgataaggaaattnnnnnnnnnnnnnnnnncgtctcaattctagattaatatttattgtagataaattagttattttcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36162192 |
ttcataaaagtgtaggttgatgataaggaaatgaaaaataaaaataaaaacgtctcaattatagattaatatttattgtagataaattagttatttttta |
36162291 |
T |
|
| Q |
209 |
tgtattattcaaactttgttaaagcttagtgactttcgataccacaagagtctagcgcaagtggttgcagtgtagagtgtatgcgagtgttgtaaaattt |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36162292 |
tgtattattcaaactttgttaaagtttagtgactttcggtaccacaagagtctcgcgcaagtggttgcagtgcagagtgtatgcgagtgttgtaaaattt |
36162391 |
T |
|
| Q |
309 |
aagggtatcgagttgaattattcctaatnnnnnnncttacttttagttataaaaataactaaacggcttgatgacttgatccttgcttccaagttaaatg |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162392 |
aagggtatcgagttgaattactcctaataaaaaaacttacttttagttataaaaataactaaatggcttgatgacttgatccttgcttccaagttaaatg |
36162491 |
T |
|
| Q |
409 |
gtttagatctgttagaaaacaaaagatattggcaactctcaaaccctctatggtgttattggctggaaaaataatgaaaggagtggtaggaaaaggtgtg |
508 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
36162492 |
gtttagatctgttaaaaaacaaaagatattggtaactctcaaaccctctatggtgttattggctgggaaaataatgaaaggagtggtagcaaaaggtgtg |
36162591 |
T |
|
| Q |
509 |
gaagcacactaataagttccaaatgtcacaatacttatagtgatttgatacttccaattttactagtcaaannnnnnnnnnnnngacttataaatatttg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
36162592 |
gaagcacactaataagttccaaatgtcacaatacttatagtgatttgatacttccaattttactagtcaaattcttttctttttgacttataaatctttg |
36162691 |
T |
|
| Q |
609 |
ctaactcgaaattcgatttaagtaaataaagtctaattaaatattattccaactaggattcaaactcgatttctttcaaatgatcctttcaaagctcaat |
708 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36162692 |
ctaactcggaattcgatttaggtaaataaagtctgatcaaatattattccaactaaaattcaaactcgatttctttcaaatgatccgttcaaagctcaat |
36162791 |
T |
|
| Q |
709 |
taccacttaattatgatcacttatt-ttttactattcaaattatgccaccaaacattacaacatagtgttcaatatctgtc-nnnnnnnnngtggtgtcc |
806 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
36162792 |
taccacttaattatgatcacttattgttttactattcaaattatgccaccaaacattacaacatagtgctcaatatctgtctttcttttttgcggtgtct |
36162891 |
T |
|
| Q |
807 |
agaaaacctcggaccttacatatattatgtattggttcatatcaattgaattatttgatacaacaataagattaccgttaattaatgaatcactcattgt |
906 |
Q |
| |
|
|||||| | |||||||||||||||||| ||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36162892 |
gaaaaaccccagaccttacatatattatgcatt-gttcataccaactgaattatttgatacatcaataagattaccgttaattaatcaatcactcattgt |
36162990 |
T |
|
| Q |
907 |
ttat |
910 |
Q |
| |
|
|||| |
|
|
| T |
36162991 |
ttat |
36162994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 810 - 840
Target Start/End: Original strand, 2249422 - 2249452
Alignment:
| Q |
810 |
aaacctcggaccttacatatattatgtattg |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2249422 |
aaacctcggaccttacatatattatgtattg |
2249452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 810 - 840
Target Start/End: Complemental strand, 32496941 - 32496911
Alignment:
| Q |
810 |
aaacctcggaccttacatatattatgtattg |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32496941 |
aaacctcggaccttacatatattatgtattg |
32496911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University