View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917-Insertion-5 (Length: 542)
Name: NF5917-Insertion-5
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917-Insertion-5 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Original strand, 46681073 - 46681606
Alignment:
| Q |
9 |
aatagacttcaaactaatatttgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgc |
108 |
Q |
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| T |
46681073 |
aatagacttaaaactaatatttgcactaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaatatggtgttatgc |
46681172 |
T |
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| Q |
109 |
tattacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaat |
208 |
Q |
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| T |
46681173 |
tattacatatagtttcatgctgctaccttttctttactttcctgctaatacgtatagtttgaaattcatacattcaaaagggttccctgcttcatctaat |
46681272 |
T |
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| Q |
209 |
ctaatttaatattttctcaaatcaaactgcctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgcaattataacacacattca |
308 |
Q |
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| T |
46681273 |
ctaatttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgtaattataacacacattca |
46681372 |
T |
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| Q |
309 |
tataaatatgcagaagggtcaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatggacnnnnnnnn |
408 |
Q |
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| T |
46681373 |
tataaatatgcagaagggttaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatgtccaaaaaaaa |
46681472 |
T |
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| Q |
409 |
nncagaggaagaagataaagatgcaattagacgtaagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattc |
508 |
Q |
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| T |
46681473 |
aacagaggaagaagataaagatgcaattagatgtaagatagtatatatgaaaactgataaataatctatgaacatgcatgagaagttatacacaaaattc |
46681572 |
T |
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| Q |
509 |
attgtaactcaaatagatttgattttccaacctc |
542 |
Q |
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| T |
46681573 |
attgtaactcaaatagatttgattttccaacctc |
46681606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 46696389 - 46696548
Alignment:
| Q |
112 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
211 |
Q |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
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| Q |
212 |
atttaatattttctcaaatcaaactgcctccaaacaaacgatacaaactagctatctact |
271 |
Q |
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| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaagctagctatctact |
46696548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 46696295 - 46696357
Alignment:
| Q |
49 |
caatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctat |
111 |
Q |
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| T |
46696295 |
caatataaattgtcacgctatcatttagaaaccaacctccctttcaatatggtgttatgctat |
46696357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 443 - 535
Target Start/End: Original strand, 46687817 - 46687909
Alignment:
| Q |
443 |
aagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttc |
535 |
Q |
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| T |
46687817 |
aagataatatgtatgataactgatatataatttacaaacatgcatgataagttatgcacaaaattgactgtaactcaaatagatttgattttc |
46687909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 535
Target Start/End: Original strand, 46704741 - 46704832
Alignment:
| Q |
447 |
tagtatatatgaaaactggtaaataatctatgaa---catgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttc |
535 |
Q |
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| T |
46704741 |
tagtatgtgtgataactgataaataatctataaaaaacatgcatgataagctatacacaaaatttactgtaactcaagtagatttgattttc |
46704832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 46686368 - 46686431
Alignment:
| Q |
282 |
ttgaattgcaattataacacacat--tcatataaatatgcagaagggtcaatttatgatataac |
343 |
Q |
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| T |
46686368 |
ttgaattgcaattctaacacatatggtcatagaaatatgcagaaggatcaatatataatataac |
46686431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 29533362 - 29533206
Alignment:
| Q |
112 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
211 |
Q |
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| T |
29533362 |
tacatatggttttttgctactcccttttaattactatcatgctactacatatagtttgcaatttaca-attcaaaagggtacccaacttcatctgatcta |
29533264 |
T |
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| Q |
212 |
atttaatatttt-ctcaaatcaaactgcctccaaacaaacgatacaaactagctatct |
268 |
Q |
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| T |
29533263 |
gtttaatttttttcttgaattgaactacttccaaacaaacgatacaagctagccatct |
29533206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
| Q |
44 |
cctttcaatataaatagtcatgctatcatttagaaacc |
81 |
Q |
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| T |
12055156 |
cctttcaatataaaccgtcatgctatcatttagaaacc |
12055193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
| Q |
45 |
ctttcaatataaatagtcatgctatcatttagaaacc |
81 |
Q |
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| T |
28313390 |
ctttcaatataaaccgtcatgctatcatttagaaacc |
28313354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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