View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917-Insertion-6 (Length: 490)
Name: NF5917-Insertion-6
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 164216 - 164697
Alignment:
| Q |
9 |
gtcagttactgcaatgttaggaacaaatacatacaagtaggaacataacgaatctccatgataacagttaaagaattctaattataaaccataatagaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164216 |
gtcagttactgcaatgttaggaacaaatacatacaagtaggaacataacgaatctccatgataacagttaaagaattctaattataaaccataatagaaa |
164315 |
T |
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| Q |
109 |
gcttataactagtgatagtcatgcgatgttatccaatacaatatacatgtgaaatgaatcgagagtttattctatctgattttcacctttgttttttaca |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164316 |
gcttataactagtgatagtcatgcgatattatccaatacaatatacatgtgaaatgaatcgagagtttattctatctgattttcacctttgttttttaca |
164415 |
T |
|
| Q |
209 |
gctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164416 |
gctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttga |
164515 |
T |
|
| Q |
309 |
gagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggttagaatctttatctttaatttatcacaatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
164516 |
gagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctatgtgcaaaggttagagtctttatctttaattgatcacaatg |
164615 |
T |
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| Q |
409 |
tgtgaaattacacatcctttttaacataggagggataatgatccattttatgtctcataggaagatctttactatccccatc |
490 |
Q |
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| T |
164616 |
tgtgaaattacacatcctttttaacataggagggataatgatccattttatgtctcataggaagatctttactatccccatc |
164697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 207 - 490
Target Start/End: Original strand, 103448 - 103737
Alignment:
| Q |
207 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
306 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
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| Q |
307 |
gagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggttagaatctttatctttaatttatcacaa |
406 |
Q |
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| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaa |
103647 |
T |
|
| Q |
407 |
tgtgtgaaattacacatcctttttaac------ataggagggataatgatccattttatgtctcataggaagatctttactatccccatc |
490 |
Q |
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|||||| | |||||| |||| |||| | |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
103648 |
tgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatc |
103737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 179 - 460
Target Start/End: Complemental strand, 92882 - 92601
Alignment:
| Q |
179 |
tctatctgattttcacctttgtttt-ttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgta |
277 |
Q |
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||||||||||||||| || |||| || |||||||||||||||| |||||||| | |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
92882 |
tctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtc |
92783 |
T |
|
| Q |
278 |
ggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaagg |
377 |
Q |
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| T |
92782 |
ggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaagg |
92683 |
T |
|
| Q |
378 |
ttagaatctttatctttaatttatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttatg |
460 |
Q |
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| T |
92682 |
tgaggctctttgtctctaattcatgacagtgtatgaatttacacat-ctctttaacgtatgagggataatgttccattttatg |
92601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 205 - 378
Target Start/End: Complemental strand, 5670533 - 5670360
Alignment:
| Q |
205 |
tacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacag |
304 |
Q |
| |
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|||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||| || |
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| T |
5670533 |
tacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaag |
5670434 |
T |
|
| Q |
305 |
ttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
378 |
Q |
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|||||||||||||||| ||| ||| |||||||||| ||||||| ||| |||||| |||||||||||||| |
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| T |
5670433 |
ttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5670360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 5722646 - 5722474
Alignment:
| Q |
206 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
305 |
Q |
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||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
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| T |
5722646 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
5722547 |
T |
|
| Q |
306 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
378 |
Q |
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||||||||||||||| ||| |||||||||||||| ||||||| ||| ||| ||||||||||||||||| |
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| T |
5722546 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggt |
5722474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 5692306 - 5692134
Alignment:
| Q |
206 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
305 |
Q |
| |
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||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | | |||| ||| |
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| T |
5692306 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagt |
5692207 |
T |
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| Q |
306 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
378 |
Q |
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||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||| |||||||||||||| |
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| T |
5692206 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5692134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 378
Target Start/End: Original strand, 13052377 - 13052544
Alignment:
| Q |
211 |
taaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgaga |
310 |
Q |
| |
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||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
13052377 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
13052476 |
T |
|
| Q |
311 |
gaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
378 |
Q |
| |
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|||||| | |||| |||||||| |||||| | ||||| |||||||| |||| |||||||||||| |
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| T |
13052477 |
gaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggt |
13052544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 207 - 350
Target Start/End: Complemental strand, 12137849 - 12137706
Alignment:
| Q |
207 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
306 |
Q |
| |
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||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| ||| | |||||||| |||||||||||||| |
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| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
|
| Q |
307 |
gagagaagaactccatacccaaccttatgaaaaaactaattgga |
350 |
Q |
| |
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||||||||||||| |||| ||||||||| |||| |||||||| |
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| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattgga |
12137706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
243 |
tgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacacca |
292 |
Q |
| |
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|||| |||| |||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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