View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917-Insertion-7 (Length: 420)
Name: NF5917-Insertion-7
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 42182936 - 42182522
Alignment:
| Q |
9 |
ggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttggnnnnnnnnnnaggttccttgtcttgaacgcgaaactcacccat |
108 |
Q |
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| T |
42182936 |
ggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttggttttttttttaggttccttgtcttgaacgcgaaactcacccat |
42182837 |
T |
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| Q |
109 |
aactaattaaaatgaaaccaagcacactttggtgaaaaaagaaaacaactttgtttgttgtaatgttacttacttttacttgttatattataccaatagt |
208 |
Q |
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| T |
42182836 |
aactaattaaaatgaaaccaagcacactttggtgaaaaaagaaaacaactttgtttgttgtaatgttacttacttttacttgttatattatgccaatagt |
42182737 |
T |
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| Q |
209 |
aaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaaatgataatgaatatgatatga |
308 |
Q |
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| T |
42182736 |
aaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaaatgataatgcatatgatatgg |
42182637 |
T |
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| Q |
309 |
taatata---tagtgtagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagagatttatgattgtgttatgggt |
405 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182636 |
taatatatagtagtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagagatttatgattgtgttatgggt |
42182537 |
T |
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| Q |
406 |
tgccgccattctcgg |
420 |
Q |
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| T |
42182536 |
tgccgccattctcgg |
42182522 |
T |
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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 17366217 - 17366154
Alignment:
| Q |
355 |
tgtaaagaagacaggtgttggaatggagagatttatgattgtgttatgggttgccgccattctc |
418 |
Q |
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| T |
17366217 |
tgtaaagaggacagatgttggaatggagagatttaagattgtgttatgggttgccgccattctc |
17366154 |
T |
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