View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917_low_2 (Length: 720)
Name: NF5917_low_2
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917_low_2 |
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| [»] scaffold0338 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Original strand, 29203444 - 29204129
Alignment:
| Q |
19 |
gattgcgtggaagacctgagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203444 |
gattgcgtggaagacctgagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaag |
29203543 |
T |
|
| Q |
119 |
catttgtcactttttcatctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29203544 |
catttgtcactttttcatctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtc |
29203643 |
T |
|
| Q |
219 |
aatattagacacagggtcagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203644 |
aatattagacacagggtcagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatat |
29203743 |
T |
|
| Q |
319 |
agttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29203744 |
agttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattat |
29203843 |
T |
|
| Q |
419 |
tgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgggccggccctgattag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
29203844 |
tgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacattgggccggccctgattag |
29203943 |
T |
|
| Q |
519 |
gtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttgaaatcttctgcaccatgtagagaaaaat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203944 |
gtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttgaaatcttctgcaccatgtagagaaaaat |
29204043 |
T |
|
| Q |
619 |
atttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgatgat |
704 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204044 |
atttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgatgat |
29204129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 518
Target Start/End: Complemental strand, 43585389 - 43585278
Alignment:
| Q |
406 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
504 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||| |||| ||||| ||| || ||||| |||| |||||||||||| ||| |||||| |
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|
| T |
43585389 |
aacttgat-ttattatgcttttaataagcattgtgtt-attttttttaattccaaaagacctaattataaaatttgttttaggcctcttgacatgttggg |
43585292 |
T |
|
| Q |
505 |
ccggccctgattag |
518 |
Q |
| |
|
||||||||||||| |
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| T |
43585291 |
tcggccctgattag |
43585278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Complemental strand, 12648432 - 12647747
Alignment:
| Q |
19 |
gattgcgtggaagacctgagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaag |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12648432 |
gattgcgtggaagacctgagatgtgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaag |
12648333 |
T |
|
| Q |
119 |
catttgtcactttttcatctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtc |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
12648332 |
catttgtcactttttcatcaggtttcaggacaaccatgtattttggtgatttttatgatcgataagatttttccagatattttctaaaaccgctaatgtc |
12648233 |
T |
|
| Q |
219 |
aatattagacacagggtcagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
12648232 |
aatattagacacagggtcagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctgaaaaaatgcctcgaaaaaatttaatat |
12648133 |
T |
|
| Q |
319 |
agttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattat |
418 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12648132 |
agttataaacatataatatgacaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattat |
12648033 |
T |
|
| Q |
419 |
tgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgggccggccctgattag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12648032 |
tgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgggccggccctgattag |
12647933 |
T |
|
| Q |
519 |
gtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttgaaatcttctgcaccatgtagagaaaaat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
12647932 |
gtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttgaaatcttctgcaccatatagagaaaaat |
12647833 |
T |
|
| Q |
619 |
atttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgatgat |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12647832 |
atttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgatgat |
12647747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 518
Target Start/End: Complemental strand, 13511015 - 13510904
Alignment:
| Q |
406 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
504 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||| |||| ||||| ||| |||||||| ||||||||||||||||| ||| |||||| |
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| T |
13511015 |
aacttgat-ttattatgcttttaataagcattgtgtt-attttttttaattccaaaagacctaatcataaaatttgctttaggcctcttgacatgttggg |
13510918 |
T |
|
| Q |
505 |
ccggccctgattag |
518 |
Q |
| |
|
||||||||||||| |
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|
| T |
13510917 |
tcggccctgattag |
13510904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 518
Target Start/End: Complemental strand, 24579887 - 24579776
Alignment:
| Q |
406 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
504 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||||| || ||||| ||| || ||||| ||||||||| ||||||| ||| |||||| |
|
|
| T |
24579887 |
aacttgat-ttattatgcttttaataagcattgtgttaatttttttaa-ttccaaaagacctaattataaaatttgctttaagcctcttgacatgttggg |
24579790 |
T |
|
| Q |
505 |
ccggccctgattag |
518 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24579789 |
tcggccctgattag |
24579776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 21486099 - 21486052
Alignment:
| Q |
242 |
aagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggc |
289 |
Q |
| |
|
||||||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
21486099 |
aagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggc |
21486052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 18424 - 18339
Alignment:
| Q |
263 |
agagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaat |
348 |
Q |
| |
|
|||| |||||||||||| |||||||| ||| |||| ||||| ||| || | ||| ||| |||||| |||||||||| || |||||| |
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|
| T |
18424 |
agagttttaggcctcaagattttgggttaagaaaaggcctcaaaataagtcaatttagctataaatatataatatgacatactaat |
18339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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