View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917_low_3 (Length: 634)
Name: NF5917_low_3
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 250 - 622
Target Start/End: Original strand, 19137101 - 19137473
Alignment:
| Q |
250 |
agggatattaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcgacgagttcatccaatgattccggttgaggat |
349 |
Q |
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| T |
19137101 |
agggatactaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcaacgagttcatccaatgattccggttgaggat |
19137200 |
T |
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| Q |
350 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
449 |
Q |
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| T |
19137201 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
19137300 |
T |
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| Q |
450 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacagggcgaaggtcttgt |
549 |
Q |
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| T |
19137301 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacggggcgaaggtcttgt |
19137400 |
T |
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| Q |
550 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
622 |
Q |
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| T |
19137401 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
19137473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 19136871 - 19137078
Alignment:
| Q |
17 |
agtaagtgatgcagacactattaatttctaatgtgtaagtaaaatatattaataccagaatgaaataggaaaacaatacttaattaaaaacaaatgaagt |
116 |
Q |
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| T |
19136871 |
agtaagtgatgcagacactattaatttctaatgtggaagtaaaatatattaataccagaatgaaataggaaaagaatacttaattaaaaacaaatgaagt |
19136970 |
T |
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| Q |
117 |
aatacacc---acatgattgaaatgaaacttgtgtggagaaccaggtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaa |
213 |
Q |
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| T |
19136971 |
aatacaccactacatgattgaaatgaaacttgtgtggagaaccaagtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaa |
19137070 |
T |
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| Q |
214 |
gcattatg |
221 |
Q |
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| T |
19137071 |
gcattatg |
19137078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 51687418 - 51687326
Alignment:
| Q |
309 |
gtaataatcgacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
401 |
Q |
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|||| ||||||| |||||||| | ||||| ||||||||||||| ||| |||| |||||| |||| ||| ||||| | ||||||||||||||| |
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| T |
51687418 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
51687326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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