View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917_low_4 (Length: 568)
Name: NF5917_low_4
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Original strand, 46681073 - 46681614
Alignment:
| Q |
19 |
aatagacttcaaactaatatttgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgc |
118 |
Q |
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| T |
46681073 |
aatagacttaaaactaatatttgcactaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaatatggtgttatgc |
46681172 |
T |
|
| Q |
119 |
tattacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681173 |
tattacatatagtttcatgctgctaccttttctttactttcctgctaatacgtatagtttgaaattcatacattcaaaagggttccctgcttcatctaat |
46681272 |
T |
|
| Q |
219 |
ctaatttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgcaattataacacacattca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46681273 |
ctaatttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgtaattataacacacattca |
46681372 |
T |
|
| Q |
319 |
tataaatatgcagaagggtcaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatggacnnnnnnnn |
418 |
Q |
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| T |
46681373 |
tataaatatgcagaagggttaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatgtccaaaaaaaa |
46681472 |
T |
|
| Q |
419 |
nncagaggaagaagataaagatgcaattagacgtaagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattc |
518 |
Q |
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| T |
46681473 |
aacagaggaagaagataaagatgcaattagatgtaagatagtatatatgaaaactgataaataatctatgaacatgcatgagaagttatacacaaaattc |
46681572 |
T |
|
| Q |
519 |
attgtaactcaaatagatttgattttccaacctcttcatctc |
560 |
Q |
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| T |
46681573 |
attgtaactcaaatagatttgattttccaacctcttcatctc |
46681614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 122 - 281
Target Start/End: Original strand, 46696389 - 46696548
Alignment:
| Q |
122 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
|
| Q |
222 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctact |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaagctagctatctact |
46696548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 46696295 - 46696357
Alignment:
| Q |
59 |
caatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctat |
121 |
Q |
| |
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| T |
46696295 |
caatataaattgtcacgctatcatttagaaaccaacctccctttcaatatggtgttatgctat |
46696357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 46687817 - 46687923
Alignment:
| Q |
453 |
aagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttccaacctc |
552 |
Q |
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|||||| ||| ||||| ||||| || ||||| || ||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
46687817 |
aagataatatgtatgataactgatatataatttacaaacatgcatgataagttatgcacaaaattgactgtaactcaaatagatttgattttctgacctc |
46687916 |
T |
|
| Q |
553 |
ttcatct |
559 |
Q |
| |
|
|||||| |
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|
| T |
46687917 |
atcatct |
46687923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 545
Target Start/End: Original strand, 46704741 - 46704832
Alignment:
| Q |
457 |
tagtatatatgaaaactggtaaataatctatgaa---catgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttc |
545 |
Q |
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| T |
46704741 |
tagtatgtgtgataactgataaataatctataaaaaacatgcatgataagctatacacaaaatttactgtaactcaagtagatttgattttc |
46704832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 46686368 - 46686431
Alignment:
| Q |
292 |
ttgaattgcaattataacacacat--tcatataaatatgcagaagggtcaatttatgatataac |
353 |
Q |
| |
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||||||||||||| ||||||| || ||||| |||||||||||||| ||||| ||| ||||||| |
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|
| T |
46686368 |
ttgaattgcaattctaacacatatggtcatagaaatatgcagaaggatcaatatataatataac |
46686431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 278
Target Start/End: Complemental strand, 29533362 - 29533206
Alignment:
| Q |
122 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
221 |
Q |
| |
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||||||| |||| |||| || |||||| ||||| || ||||| ||| ||||||||| |||| | | |||||||||||| ||| |||||||| ||||| |
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| T |
29533362 |
tacatatggttttttgctactcccttttaattactatcatgctactacatatagtttgcaatttaca-attcaaaagggtacccaacttcatctgatcta |
29533264 |
T |
|
| Q |
222 |
atttaatatttt-ctcaaatcaaactacctccaaacaaacgatacaaactagctatct |
278 |
Q |
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|||||| |||| || ||| |||||| |||||||||||||||||| ||||| |||| |
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|
| T |
29533263 |
gtttaatttttttcttgaattgaactacttccaaacaaacgatacaagctagccatct |
29533206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
| Q |
54 |
cctttcaatataaatagtcatgctatcatttagaaacc |
91 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
12055156 |
cctttcaatataaaccgtcatgctatcatttagaaacc |
12055193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
| Q |
55 |
ctttcaatataaatagtcatgctatcatttagaaacc |
91 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
28313390 |
ctttcaatataaaccgtcatgctatcatttagaaacc |
28313354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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