View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917_low_7 (Length: 337)
Name: NF5917_low_7
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 95 - 331
Target Start/End: Original strand, 39991774 - 39992009
Alignment:
| Q |
95 |
cctagaattttcattcaatcttatgagtgagttggttttgtttaatgtaacgtgatataattttgtgtcccacgtttttgtcacttatgaaagatgataa |
194 |
Q |
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| T |
39991774 |
cctagaattttcattcaatcttatgagtgagttggttttgtttattgtcacgtgatataattttgtgtcccacgtttttgtcacttatgaaagatgataa |
39991873 |
T |
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| Q |
195 |
cagcaagattgacaagatcttannnnnnncagcatatttttatgggtcttggatactatcatttgatgaattttgcacgcttcttcttttgacttgttag |
294 |
Q |
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| T |
39991874 |
cagcaagattgacaagatctta-ttttttcagcatatttttatgggtcttggatactatcatttgatgaattttgcacgcttcttcttttgacttgttag |
39991972 |
T |
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| Q |
295 |
gtggcattattgcttagggttgtttatcttcatctca |
331 |
Q |
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| T |
39991973 |
gtggcattatttcttagggttgtttatcttcatctca |
39992009 |
T |
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