View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5917_low_9 (Length: 220)
Name: NF5917_low_9
Description: NF5917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5917_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 27074880 - 27074776
Alignment:
| Q |
102 |
ggttcctaaattacagtccatgcagtcatataaaataaatactttataaagttagaaagaacaaggtgaaatgcatacctaaatttcgtattcacagttg |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27074880 |
ggttcctaaattacagtccatgcaatcatataaaataaatactttataaagttagaaagaacaaggtgaaatccatacctaaatttcgtattcacagttg |
27074781 |
T |
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| Q |
202 |
tttgt |
206 |
Q |
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||||| |
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| T |
27074780 |
tttgt |
27074776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 27154973 - 27154869
Alignment:
| Q |
102 |
ggttcctaaattacagtccatgcagtcatataaaataaatactttataaagttagaaagaacaaggtgaaatgcatacctaaatttcgtattcacagttg |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27154973 |
ggttcctaaattacagtccatgcaatcatataaaataaatactttataaagttagaaagaacaaggtgaaatccatacctaaatttcgtattcacagttg |
27154874 |
T |
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| Q |
202 |
tttgt |
206 |
Q |
| |
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||||| |
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| T |
27154873 |
tttgt |
27154869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27074927 - 27074880
Alignment:
| Q |
12 |
gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27074927 |
gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg |
27074880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27155020 - 27154973
Alignment:
| Q |
12 |
gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155020 |
gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg |
27154973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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