View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918-Insertion-10 (Length: 556)
Name: NF5918-Insertion-10
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Original strand, 371244 - 371777
Alignment:
| Q |
9 |
tgttgtgtttttgatgaaatacaatctagctagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatctatc |
108 |
Q |
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| T |
371244 |
tgttgtgtttttgatgaaatacaatctaggtagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatatatc |
371343 |
T |
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| Q |
109 |
aattcgatcttacccaatc---taattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaa---------attat |
196 |
Q |
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| T |
371344 |
aattcgatcttacccaatcatctaattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaagaataagaaattat |
371443 |
T |
|
| Q |
197 |
atggtgaggttgtgcttaattggtgggtggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
296 |
Q |
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| T |
371444 |
atggtgaggttgtgctt----ggtggggggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
371539 |
T |
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| Q |
297 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
396 |
Q |
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| T |
371540 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
371639 |
T |
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| Q |
397 |
caagctgattcgccattcttcttctatcgatccaaccttgc--------------tgttgctgcatctacaagcttggctaaatta---tatttgtcata |
479 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
371640 |
caagttgattcgcca---ttcttctatcgatccaaccttgctattcaacaattaatattgctgcatctacaagcttggctaaattatactatttgtcata |
371736 |
T |
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| Q |
480 |
tgagacatatacattaatgtgactatataatatatggttgg |
520 |
Q |
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| T |
371737 |
tgagacatagacattaatgtgactatataatatatggttgg |
371777 |
T |
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