View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918-Insertion-11 (Length: 533)

Name: NF5918-Insertion-11
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918-Insertion-11
NF5918-Insertion-11
[»] chr1 (2 HSPs)
chr1 (46-533)||(32955358-32955845)
chr1 (55-97)||(32925465-32925507)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 46 - 533
Target Start/End: Original strand, 32955358 - 32955845
Alignment:
Q  46 aatggtaatagtttcaatctgatggtaatggtaatagtttctcaacaagttgcctcgttttctttatctataagatgaagcttcctcaactagcagacta 145  Q
    |||||||||||||||||| |||||||||| |||||||||||| || || ||| ||||||||||||||||||||||||||||||||||| || | | | ||    
T  32955358 aatggtaatagtttcaatttgatggtaatcgtaatagtttctaaaaaa-ttgtctcgttttctttatctataagatgaagcttcctcatctcgtaaatta 32955456  T
Q  146 gaaggatcaccagcagcttatacctacactgctgatgattacaaattgtttttctaaaatgcaactgttgc-taacataatgatatgtcatagttgtcaa 244  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | | || |||||| | ||| |||| |||||    
T  32955457 gaaggatcaccagcagcttatacctacactgctgatgattgcaaattgtttttctaaaatgcaactgccacgttacttaatgacaggtcgtagtcgtcaa 32955556  T
Q  245 aaaagttaacaaaatttccataaaaaactccaaattgcagaatttgattaattgtatgttggaactaacaatgagtttgccgaaatcacaaaatgtcact 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32955557 aaaagttaacaaaatttccataaaaaactccaaattgcagaatttgattaattgtatgttggaactaacaatgagtttgacgaaatcacaaaatgtcact 32955656  T
Q  345 gtgattatggcaaaaactacaaattagaggtttaacaaaatcacattaccaccgtgatttcaaagttgtagaaagtgaaacgtcggaagaagacagtagt 444  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32955657 gtgattatggcaaaaactacacattagagctttaacaaaatcacattaccaccgtgatttcaaagttgtagaaagtgaagcgtcggaagaagacagtagt 32955756  T
Q  445 gttaactgggtagataacttacactgttctaatatatgcaaattacaccaactttctttttattttaatgatttacaatacattttcac 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32955757 gttaactgggtagataacttacactgttctaatatatgcaaattacaccaactttctttttattttaatgatttacaatacattttcac 32955845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 32925465 - 32925507
Alignment:
Q  55 agtttcaatctgatggtaatggtaatagtttctcaacaagttg 97  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  32925465 agttccaatttgatggtaatggtaatagtttctcaacaagttg 32925507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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