View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918-Insertion-3 (Length: 983)

Name: NF5918-Insertion-3
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918-Insertion-3
NF5918-Insertion-3
[»] chr2 (5 HSPs)
chr2 (799-970)||(41378204-41378378)
chr2 (803-926)||(41419617-41419748)
chr2 (802-927)||(38908668-38908798)
chr2 (803-862)||(14732344-14732404)
chr2 (802-920)||(22649068-22649193)
[»] chr3 (14 HSPs)
chr3 (798-926)||(31525363-31525496)
chr3 (811-920)||(47820904-47821021)
chr3 (811-920)||(28934749-28934861)
chr3 (798-927)||(43073045-43073179)
chr3 (803-926)||(10454279-10454412)
chr3 (798-920)||(9358748-9358876)
chr3 (805-927)||(53349400-53349528)
chr3 (811-920)||(28956952-28957067)
chr3 (802-927)||(8431421-8431550)
chr3 (798-858)||(52076137-52076198)
chr3 (803-858)||(44656229-44656285)
chr3 (799-920)||(20701152-20701280)
chr3 (867-929)||(55166896-55166958)
chr3 (811-856)||(46750287-46750332)
[»] chr1 (12 HSPs)
chr1 (798-920)||(19472804-19472933)
chr1 (798-926)||(12172954-12173087)
chr1 (798-930)||(26990597-26990734)
chr1 (810-930)||(46757302-46757426)
chr1 (798-929)||(38548670-38548810)
chr1 (798-927)||(31833894-31834024)
chr1 (799-930)||(42442008-42442146)
chr1 (811-920)||(8462982-8463097)
chr1 (839-920)||(43268645-43268732)
chr1 (816-930)||(47028927-47029050)
chr1 (798-847)||(28447802-28447852)
chr1 (798-850)||(43460785-43460838)
[»] chr7 (14 HSPs)
chr7 (798-927)||(46691844-46691982)
chr7 (802-891)||(30655601-30655697)
chr7 (811-912)||(36615816-36615919)
chr7 (799-920)||(33320710-33320832)
chr7 (802-920)||(1039066-1039191)
chr7 (810-862)||(32679013-32679065)
chr7 (799-862)||(19471089-19471153)
chr7 (466-557)||(42518955-42519045)
chr7 (811-920)||(49035866-49035983)
chr7 (811-930)||(41702860-41702985)
chr7 (802-858)||(42598058-42598115)
chr7 (811-862)||(22197740-22197791)
chr7 (811-862)||(22240030-22240081)
chr7 (802-920)||(31424775-31424901)
[»] chr8 (9 HSPs)
chr8 (798-930)||(38086413-38086555)
chr8 (803-930)||(40930834-40930965)
chr8 (798-967)||(25829264-25829445)
chr8 (799-930)||(5200482-5200619)
chr8 (802-915)||(13959222-13959343)
chr8 (799-930)||(24200622-24200757)
chr8 (798-858)||(22839326-22839387)
chr8 (811-862)||(44362942-44362993)
chr8 (798-862)||(2318999-2319064)
[»] chr4 (7 HSPs)
chr4 (799-930)||(32183271-32183413)
chr4 (798-858)||(15186980-15187041)
chr4 (803-862)||(16572138-16572198)
chr4 (798-858)||(25641268-25641329)
chr4 (798-915)||(47571570-47571691)
chr4 (798-862)||(16662306-16662371)
chr4 (798-858)||(42390771-42390832)
[»] chr5 (7 HSPs)
chr5 (798-862)||(23172973-23173037)
chr5 (798-848)||(9597753-9597804)
chr5 (799-911)||(42241589-42241708)
chr5 (811-857)||(22887284-22887330)
chr5 (811-926)||(9931809-9931935)
chr5 (817-862)||(3677808-3677853)
chr5 (817-862)||(25539890-25539935)
[»] chr6 (4 HSPs)
chr6 (798-930)||(15859089-15859234)
chr6 (798-929)||(33112714-33112854)
chr6 (798-859)||(6575796-6575858)
chr6 (811-930)||(10246906-10247029)
[»] scaffold0343 (1 HSPs)
scaffold0343 (799-847)||(7953-8002)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 6e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 799 - 970
Target Start/End: Original strand, 41378204 - 41378378
Alignment:
Q  799 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaatacaaaggggaaatcggttgctacacaaactccggc 898  Q
    |||||||||  |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41378204 aatcggcaagttttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaatacaaaggggaaatcggttgccacacaaactccggc 41378303  T
Q  899 taaaacaaaaaccccttt-aaaaccacccct-aagc-agaaccaaaccaaagagt-atgacgcaagcatataccta 970  Q
    |  || |||||||||||| |||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||    
T  41378304 tcgaataaaaacccctttaaaaaccacccctaaagcaagaaccaaaccaaa-agtaatgacgcaagcatataccta 41378378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 803 - 926
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca-------aaggggaaatcggttgctacacaaactc 894  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |       ||||||||||||||||| | |  ||| |    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  895 cggctaaaacaaaaacccctttaaaaccaccc 926  Q
    || ||  |||||||||||||| ||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 802 - 927
Target Start/End: Complemental strand, 38908798 - 38908668
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca-----aaggggaaatcggttgctacacaaactcc 895  Q
    ||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||| ||||| | |     ||||| |||||||| || ||| |||| ||    
T  38908798 cggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccaca-aaacacc 38908700  T
Q  896 ggctaaaacaaaaacccctttaaaaccacccc 927  Q
    || |  |||||||||||||| |||||||||||    
T  38908699 ggttcgaacaaaaaccccttaaaaaccacccc 38908668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 862
Target Start/End: Original strand, 14732344 - 14732404
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||| ||||||||||||||||| |||| ||  |||||||||||||||||||| ||||    
T  14732344 ggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaa 14732404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 802 - 920
Target Start/End: Original strand, 22649068 - 22649193
Alignment:
Q  802 cggcaaaattt-attaaccaacaagcctgtgcaagacgcactaataagctcgggt--ggaaaaataca---aaggggaaatcggttgcta-cacaaactc 894  Q
    ||||||||||| ||||||||||||||| |||||||| | ||||||||||| ||||   |||||| |||   ||||||||||||||||| |   ||||| |    
T  22649068 cggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggttgccattccaaacac 22649167  T
Q  895 cggctaaaacaaaaacccctttaaaa 920  Q
    |||||  | |||||||||||||||||    
T  22649168 cggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 798 - 926
Target Start/End: Complemental strand, 31525496 - 31525363
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-caaa---ggggaaatcggttgctacacaaac 892  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||   ||||||||||||||| ||||||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccacacaaac 31525397  T
Q  893 tccggctaaaacaaaaacccctttaaaaccaccc 926  Q
      |||||  |||||||||||||| ||||||||||    
T  31525396 aacggctcgaacaaaaaccccttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 811 - 920
Target Start/End: Complemental strand, 47821021 - 47820904
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctacacaaactccggctaaa 902  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||     |||||||||   |||||||||||||||||  ||||||| ||||||  |    
T  47821021 ttattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcga 47820922  T
Q  903 acaaaaacccctttaaaa 920  Q
    ||||||||||||||||||    
T  47820921 acaaaaacccctttaaaa 47820904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 811 - 920
Target Start/End: Original strand, 28934749 - 28934861
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga-aaaataca----aaggggaaatcggttgctacacaaactccggctaaaaca 905  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |||    |||||||||||||||||  ||||||| ||||||  ||||    
T  28934749 ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggttgc--cacaaacaccggctcgaaca 28934846  T
Q  906 aaaacccctttaaaa 920  Q
    |||||||||| ||||    
T  28934847 aaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 798 - 927
Target Start/End: Original strand, 43073045 - 43073179
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaa------aatacaaaggggaaatcggttgctacacaa 890  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||      ||||| |||||||||||||||||   | ||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatac-aaggggaaatcggttgcctta-aa 43073142  T
Q  891 actccggctaaaacaaaaacccctttaaaaccacccc 927  Q
    || ||||||  |||||||||||||| |||||||||||    
T  43073143 acaccggctcgaacaaaaaccccttaaaaaccacccc 43073179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 803 - 926
Target Start/End: Complemental strand, 10454412 - 10454279
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg------aaaaataca---aaggggaaatcggttgctacacaaac 892  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||      |||||||||   ||||||||||||||||| |||  ||     
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttgccacaagaaa 10454313  T
Q  893 tccggctaaaacaaaaacccctttaaaaccaccc 926  Q
     |||||| ||||||||||||||| ||||||||||    
T  10454312 gccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 798 - 920
Target Start/End: Original strand, 9358748 - 9358876
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga--aaaataca---aaggggaaatcggttgctacacaaa 891  Q
    ||||||||||||| |||||| |||||||||| |||| ||| | ||||||||||| |||||||  |||| |||   |||||||||||||||||  ||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgcacaaa 9358847  T
Q  892 ctccggctaaaacaaaaacccctttaaaa 920  Q
    | ||||||  |||||||||||||||||||    
T  9358848 caccggctcgaacaaaaacccctttaaaa 9358876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 805 - 927
Target Start/End: Complemental strand, 53349528 - 53349400
Alignment:
Q  805 caaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaat---aca---aaggggaaatcggttgctacacaaactccggc 898  Q
    ||||| ||||||||||||||||   ||||||| |||||||||| || |||||| |||||   |||   ||||| |||||||||||  ||||||| |||||    
T  53349528 caaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggc 53349429  T
Q  899 taaaacaaaaacccctttaaaaccacccc 927  Q
    | ||||||||||||||| |||||||||||    
T  53349428 tcaaacaaaaaccccttaaaaaccacccc 53349400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 811 - 920
Target Start/End: Complemental strand, 28957067 - 28956952
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaatacaaag---gggaaatcggttgctacacaaactccggctaaaac 904  Q
    ||||||||||||||| | ||||||||  |||| |||||||||||||    ||||| ||||||   |||||||||||||| |||||||| ||||||  |||    
T  28957067 ttattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaacaccggctcgaac 28956968  T
Q  905 aaaaacccctttaaaa 920  Q
    ||||||||||||||||    
T  28956967 aaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 802 - 927
Target Start/End: Original strand, 8431421 - 8431550
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgctacacaaactccg 896  Q
    ||||||||| ||||| | ||| ||||| |||||||| ||||||| |||||||| ||||||||    ||| ||||||||||||||||| ||| |||| |||    
T  8431421 cggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcaaca-aaacaccg 8431519  T
Q  897 gctaaaacaaaaacccctttaaaaccacccc 927  Q
    |||  |||||||||||||| |||||||||||    
T  8431520 gctcgaacaaaaaccccttaaaaaccacccc 8431550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 798 - 858
Target Start/End: Complemental strand, 52076198 - 52076137
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    ||||||||||||| ||| ||||||||||||| |||| ||| |||||||||||||||||||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 52076137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 858
Target Start/End: Original strand, 44656229 - 44656285
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtgga 44656285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 799 - 920
Target Start/End: Complemental strand, 20701280 - 20701152
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg----gaaaaataca---aaggggaaatcggttgctacacaa 890  Q
    |||| ||||||| |||||||||||| |||| || ||||| |||||||||||||||||||     |||||||||   |||||||||||| |||| |||| |    
T  20701280 aatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacac-a 20701182  T
Q  891 actccggctaaaacaaaaacccctttaaaa 920  Q
    ||| |||||  |||||||||||||| ||||    
T  20701181 actacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 867 - 929
Target Start/End: Original strand, 55166896 - 55166958
Alignment:
Q  867 aaggggaaatcggttgctacacaaactccggctaaaacaaaaacccctttaaaaccaccccta 929  Q
    |||||||||||||||||  ||||||||  ||||  |||||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccccta 55166958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 811 - 856
Target Start/End: Complemental strand, 46750332 - 46750287
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg 856  Q
    ||||||||||||||  |||| ||||| |||||||||||||||||||    
T  46750332 ttattaaccaacaaatctgtacaagatgcactaataagctcgggtg 46750287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 798 - 920
Target Start/End: Complemental strand, 19472933 - 19472804
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacacaa 890  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||   ||||||||||| ||||| | ||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaa 19472834  T
Q  891 actccggctaaaacaaaaacccctttaaaa 920  Q
    |||||||||  |||||||| ||||||||||    
T  19472833 actccggctcgaacaaaaatccctttaaaa 19472804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 798 - 926
Target Start/End: Complemental strand, 12173087 - 12172954
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-caaa---ggggaaatcggttgctacacaaac 892  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||||   ||||||||||||||| ||||||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccacacaaac 12172988  T
Q  893 tccggctaaaacaaaaacccctttaaaaccaccc 926  Q
      | |||  |||||||||||||| ||||||||||    
T  12172987 atcagctcgaacaaaaaccccttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 798 - 930
Target Start/End: Complemental strand, 26990734 - 26990597
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-ca---aaggggaaatcggttgctacacaaac 892  Q
    ||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| | ||   ||||| |||||| ||||  ||||| |    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgcacaagc 26990635  T
Q  893 tccggctaaaacaaaaacccctttaaaaccacccctaa 930  Q
     |||||| ||||||||| ||||| ||||||||||||||    
T  26990634 accggctcaaacaaaaatcccttaaaaaccacccctaa 26990597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 810 - 930
Target Start/End: Complemental strand, 46757426 - 46757302
Alignment:
Q  810 tttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca----aaggggaaatcggttgctacacaaactccggctaaaaca 905  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||    |||||||||||| |||| |||  ||| || |||  ||||    
T  46757426 tttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaaca 46757327  T
Q  906 aaaacccctttaaaaccacccctaa 930  Q
    ||||||| || ||||||||||||||    
T  46757326 aaaaccctttaaaaaccacccctaa 46757302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 798 - 929
Target Start/End: Complemental strand, 38548810 - 38548670
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctacac 888  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||     ||||| |||   ||||||||||||||||| | ||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatcggttgccatac 38548711  T
Q  889 aaactccggctaaaacaaaaacccctttaaaaccaccccta 929  Q
    ||| |  ||||  ||||||  |||||| |||||||||||||    
T  38548710 aaaatttggctcgaacaaaccccccttaaaaaccaccccta 38548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 798 - 927
Target Start/End: Complemental strand, 31834024 - 31833894
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca-aaggggaaatcggttgctacacaaactcc 895  Q
    |||| |||||||| ||||||||||||||  | |||||||| ||||||| ||||||||||| ||||| | | ||||| ||||||||||| |||  ||| ||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaaatacaagggaaaatcggttgccaca-taacacc 31833926  T
Q  896 ggctaaaacaaaaacccctttaaaaccacccc 927  Q
    ||||  |||||||||||||| |||||||||||    
T  31833925 ggctcgaacaaaaaccccttaaaaaccacccc 31833894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 799 - 930
Target Start/End: Original strand, 42442008 - 42442146
Alignment:
Q  799 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg----gaaaaataca---aaggggaaatcggttgctacacaaa 891  Q
    ||||||||||  ||||||||||||||| | |||||||| |||||||||||||||||||     |||||||||   || |||||||||||||| |   |||    
T  42442008 aatcggcaaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaa 42442107  T
Q  892 ctccggctaaaacaaaaacccctttaaaaccacccctaa 930  Q
    | ||| ||  |||||||||||||| ||||||||||||||    
T  42442108 caccgactcgaacaaaaaccccttaaaaaccacccctaa 42442146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 811 - 920
Target Start/End: Original strand, 8462982 - 8463097
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacacaaactccggctaaaac 904  Q
    ||||||||||||||||  |||||||| |||||||| |||||||||||   |||||||||   ||||| ||||||||||| ||| ||||  |||||  |||    
T  8462982 ttattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggctcgaac 8463081  T
Q  905 aaaaacccctttaaaa 920  Q
    ||||||||||| ||||    
T  8463082 aaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 920
Target Start/End: Original strand, 43268645 - 43268732
Alignment:
Q  839 cactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacacaaactccggctaaaacaaaaacccctttaaaa 920  Q
    |||||||||||||||||||   ||||| |||   |||||||||||||||||  ||||||| ||||||  |||||||||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaa 43268732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 816 - 930
Target Start/End: Complemental strand, 47029050 - 47028927
Alignment:
Q  816 aaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca---------aaggggaaatcggttgctacacaaactccggctaaaacaa 906  Q
    ||||||||||   |||||||||||| ||||||||||||||||||||| | |         |||||||||||||||||  || |||| ||||||  |||||    
T  47029050 aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttgccgcaaaaacaccggctcgaacaa 47028951  T
Q  907 aaacccctttaaaaccacccctaa 930  Q
    ||||||||| ||||| ||||||||    
T  47028950 aaaccccttaaaaactacccctaa 47028927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 798 - 847
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataa 847  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 850
Target Start/End: Complemental strand, 43460838 - 43460785
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagct 850  Q
    |||||| |||||| ||||||||||||||| |||||| ||| |||||||||||||    
T  43460838 gaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagct 43460785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 798 - 927
Target Start/End: Original strand, 46691844 - 46691982
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctacac 888  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||     |||||||||   ||||||||||||||||| |||     
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacat 46691943  T
Q  889 aaactccggctaaaacaaaaacccctttaaaaccacccc 927  Q
    |||| ||||||  |||||||||||||| |||||||||||    
T  46691944 aaacaccggctcgaacaaaaaccccttaaaaaccacccc 46691982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 802 - 891
Target Start/End: Original strand, 30655601 - 30655697
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa---tacaaa---ggggaaatcggttgctacacaaa 891  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||   ||||||||||||||| |||||||    
T  30655601 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaa 30655697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 811 - 912
Target Start/End: Original strand, 36615816 - 36615919
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca----aaggggaaatcggttgctacacaaactccggctaaaacaa 906  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||    |||||||||||||||||  |||||||||| |||  |||||    
T  36615816 ttattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgc--cacaaactccagctcgaacaa 36615913  T
Q  907 aaaccc 912  Q
    ||||||    
T  36615914 aaaccc 36615919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 799 - 920
Target Start/End: Complemental strand, 33320832 - 33320710
Alignment:
Q  799 aatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggt-ggaaaaatacaaaggggaaatcggttgctacacaaactccgg 897  Q
    ||||||||||  || |||||||||||||| |||||||| |||||||||||||||||| ||||||| |  |||||||||| ||||||   |||||| ||||    
T  33320832 aatcggcaaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaaaaaaacaaggggaaattggttgccttacaaacaccgg 33320733  T
Q  898 ctaaaacaaaaacccctttaaaa 920  Q
    ||  ||||||| |||||| ||||    
T  33320732 ctcgaacaaaacccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 802 - 920
Target Start/End: Original strand, 1039066 - 1039191
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacacaaactc 894  Q
    ||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||   ||||| |||   ||||| ||||||||||| | |||||||     
T  1039066 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcggttgcaatacaaactt 1039165  T
Q  895 cggctaaaacaaaaacccctttaaaa 920  Q
     ||||  |||||||||||||| ||||    
T  1039166 tggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 810 - 862
Target Start/End: Complemental strand, 32679065 - 32679013
Alignment:
Q  810 tttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  32679065 tttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaa 32679013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 799 - 862
Target Start/End: Original strand, 19471089 - 19471153
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||| ||||| ||||||| ||||||||| |||||||  |||||||||||||||||||||||||    
T  19471089 aatcgggaaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtggaaaaa 19471153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 466 - 557
Target Start/End: Original strand, 42518955 - 42519045
Alignment:
Q  466 attgattagtatagagaaaggaccggggggtcattgcttctatcatcacttccatattatgaaaattcttctctgtttctcgaatttgagca 557  Q
    ||||||||||||| |||||  ||| |||| ||||||||| ||| |||||||||||| | |  |||||| |||||| ||||||||||||||||    
T  42518955 attgattagtataaagaaacaaccagggg-tcattgcttttattatcacttccataatctccaaattcctctctgcttctcgaatttgagca 42519045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 811 - 920
Target Start/End: Original strand, 49035866 - 49035983
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg-----aaaaataca---aaggggaaatcggttgctacacaaactccggctaaa 902  Q
    ||||||||||||||| | || ||||| ||||||||||||||||||||     |||| ||||   ||||||||||||||||| ||| |||| |||| |  |    
T  49035866 ttattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcga 49035965  T
Q  903 acaaaaacccctttaaaa 920  Q
    ||||||||||||| ||||    
T  49035966 acaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 811 - 930
Target Start/End: Complemental strand, 41702985 - 41702860
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga---aaaataca---aaggggaaatcggttgctacacaaactccggctaaaac 904  Q
    |||| ||||||| |||| |||||||  ||||||||||| | |||||||   |||| |||   |||||||| ||||||||  ||||||| ||||||  |||    
T  41702985 ttatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccggctcgaac 41702886  T
Q  905 aaaaacccctttaaaaccacccctaa 930  Q
    ||||||||||| ||||||| ||||||    
T  41702885 aaaaaccccttaaaaaccaaccctaa 41702860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 802 - 858
Target Start/End: Complemental strand, 42598115 - 42598058
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    ||||||||| |||||||||||||| || |||||||| ||||||||||||| |||||||    
T  42598115 cggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtgga 42598058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 862
Target Start/End: Complemental strand, 22197791 - 22197740
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    ||||||||||||||| | |||||||  ||||||| |||||||||||||||||    
T  22197791 ttattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaa 22197740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 862
Target Start/End: Original strand, 22240030 - 22240081
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    ||||||||||||||| | |||||||  ||||||| |||||||||||||||||    
T  22240030 ttattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaa 22240081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 802 - 920
Target Start/End: Original strand, 31424775 - 31424901
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg---aaaaataca---aaggggaaatcggttgctacac-aaact 893  Q
    ||||||||| |||||||||||||| || ||||||||  |||||||||||| ||||||   ||||| |||   ||||||||||||||||| |  | ||||     
T  31424775 cggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaaca 31424874  T
Q  894 ccggctaaaacaaaaacccctttaaaa 920  Q
    ||||||  | |||||||||||||||||    
T  31424875 ccggctcgatcaaaaacccctttaaaa 31424901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 798 - 930
Target Start/End: Original strand, 38086413 - 38086555
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg----aaaaataca---aaggggaaatcggttgctacaca 889  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    |||||||||   ||||| ||||||||||| | |||    
T  38086413 gaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccataca 38086512  T
Q  890 aactccggctaaaacaaaaaccccttt--aaaaccacccctaa 930  Q
    ||||| ||||  |||||||||||||||  ||||||||||||||    
T  38086513 aactctggctcgaacaaaaacccctttaaaaaaccacccctaa 38086555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 803 - 930
Target Start/End: Original strand, 40930834 - 40930965
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg--aaaaataca---aaggggaaatcggttgctacacaaactccg 896  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||   ||||||||||||||||   |||||||  ||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttg--tcacaaacaacg 40930931  T
Q  897 gctaaaacaaaaacccctttaaaaccacccctaa 930  Q
    |||  ||||||||| |||| ||||||||||||||    
T  40930932 gctcgaacaaaaactccttaaaaaccacccctaa 40930965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 798 - 967
Target Start/End: Original strand, 25829264 - 25829445
Alignment:
Q  798 gaatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa----tacaaa---ggggaaatcggttgctacacaa 890  Q
    |||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||    ||||||   ||||||||||||| |   | ||    
T  25829264 gaatcggcaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttccctataa 25829363  T
Q  891 actccggctaaaacaaaaacccctttaaaaccacccctaagca----gaaccaaaccaaagagt-atgacgcaagcatatac 967  Q
    || ||||||  || ||||||||||| |||||||||| ||| ||     |||||| | ||||||| |||||||||||||||||    
T  25829364 acaccggcttgaataaaaaccccttaaaaaccacccataaacaaaggaaaccaaccaaaagagtaatgacgcaagcatatac 25829445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 799 - 930
Target Start/End: Original strand, 5200482 - 5200619
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga--aaaataca---aaggggaaatcggttgctacacaaac 892  Q
    |||||||||||| ||||||||||||||| | ||||||||  |||||||||| | |||||||  |||| |||   ||||| |||||||||||  |||||||    
T  5200482 aatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcggttgccgcacaaac 5200581  T
Q  893 tccggctaaaacaaaaacccctttaaaaccacccctaa 930  Q
     ||||||  |||||||||||||| |||| |||||||||    
T  5200582 accggctcgaacaaaaaccccttaaaaatcacccctaa 5200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 802 - 915
Target Start/End: Original strand, 13959222 - 13959343
Alignment:
Q  802 cggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg----aaaaataca---aaggggaaatcggttgctacacaaact 893  Q
    ||||||||| |||||| |||||||||| |||||||| ||| ||||||||||||||||    |||||||||   || || ||||||||||| ||| ||||     
T  13959222 cggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcggttgccacataaaca 13959321  T
Q  894 ccggctaaaacaaaaacccctt 915  Q
    |||||| |||||||||||||||    
T  13959322 ccggctcaaacaaaaacccctt 13959343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 799 - 930
Target Start/End: Original strand, 24200622 - 24200757
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaata-ca---aaggggaaatcggttgctacacaaact 893  Q
    |||||||||||| ||||||| ||||||| | |||||||| ||||||||||||| ||||||||||| | ||   |||||||||||||||||  || ||||     
T  24200622 aatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccgcaaaaaca 24200721  T
Q  894 ccggctaaaacaaaaacccctttaaaaccacccctaa 930  Q
    ||||||  |||||||| | ||| ||||||||||||||    
T  24200722 ccggctcgaacaaaaa-cacttaaaaaccacccctaa 24200757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 798 - 858
Target Start/End: Complemental strand, 22839387 - 22839326
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatgga 22839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 811 - 862
Target Start/End: Original strand, 44362942 - 44362993
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||    
T  44362942 ttattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaa 44362993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 862
Target Start/End: Original strand, 2318999 - 2319064
Alignment:
Q  798 gaatcggcaaa-atttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    ||||||||||| ||||||||||||| ||  |||||||||| ||||||||||| | ||||| |||||    
T  2318999 gaatcggcaaagatttattaaccaataaatctgtgcaagatgcactaataagtttgggtgaaaaaa 2319064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 799 - 930
Target Start/End: Complemental strand, 32183413 - 32183271
Alignment:
Q  799 aatcggcaaaat-ttattaaccaa-caagcctgtgcaagacgcactaataagctcgggtgg----aaaaataca---aaggggaaatcggttgctacaca 889  Q
    |||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||    ||||| |||   ||||||||||||||||| | |||    
T  32183413 aatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccataca 32183314  T
Q  890 aactccggctaaaacaaaaaccccttt--aaaaccacccctaa 930  Q
    ||| ||||||  |||||||||||||||  ||||||||||||||    
T  32183313 aacaccggctcgaacaaaaacccctttaaaaaaccacccctaa 32183271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 798 - 858
Target Start/End: Original strand, 15186980 - 15187041
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 803 - 862
Target Start/End: Complemental strand, 16572198 - 16572138
Alignment:
Q  803 ggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaa 16572138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 798 - 858
Target Start/End: Original strand, 25641268 - 25641329
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtgga 25641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 915
Target Start/End: Original strand, 47571570 - 47571691
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaataca-----aaggggaaatcggttgctacacaaa 891  Q
    ||||||||||||| |||||||||||||| || ||| |||  ||||||||||||||||||| ||||| | |     ||||| |||| ||||||  ||||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggttgc--cacaaa 47571667  T
Q  892 ctccggctaaaacaaaaacccctt 915  Q
    | |||||| |||||||||||||||    
T  47571668 caccggctcaaacaaaaacccctt 47571691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 798 - 862
Target Start/End: Original strand, 16662306 - 16662371
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    ||||| ||||||| ||||||||||||||||| |||| ||| |||||||||||||  ||||||||||    
T  16662306 gaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaa 16662371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 798 - 858
Target Start/End: Original strand, 42390771 - 42390832
Alignment:
Q  798 gaatcggcaaaattt-attaaccaacaagcctgtgcaagacgcactaataagctcgggtgga 858  Q
    |||||||| |||||| |||  |||||||||| |||||||||| |||||||||||||||||||    
T  42390771 gaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtgga 42390832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 798 - 862
Target Start/End: Original strand, 23172973 - 23173037
Alignment:
Q  798 gaatcggcaaaatttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  23172973 gaatcggcaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaa 23173037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 798 - 848
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataag 848  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 799 - 911
Target Start/End: Original strand, 42241589 - 42241708
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtg---gaaaaataca---aaggggaaatcggttgctacacaaa 891  Q
    |||||||||||| ||||||||||| ||| | | |||||| |||||||||||||||| ||    |||||||||   |||||||||||||| || | |||||    
T  42241589 aatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcggtcgccatacaaa 42241688  T
Q  892 ctccggctaaaacaaaaacc 911  Q
    ||||||||  ||||||||||    
T  42241689 ctccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 857
Target Start/End: Complemental strand, 22887330 - 22887284
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg 857  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  22887330 ttattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 926
Target Start/End: Original strand, 9931809 - 9931935
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg--------aaaaatacaa---aggggaaatcggttgctacacaaactccggct 899  Q
    ||||||||||||||||| |||||||| ||||||| ||||| ||||||        ||||||||||   ||||||||||||||||  ||||||| || |||    
T  9931809 ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaaatcggttgccgcacaaacaccagct 9931908  T
Q  900 aaaacaaaaacccctttaaaaccaccc 926  Q
      ||||||||| |||  ||||||||||    
T  9931909 cgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 862
Target Start/End: Original strand, 3677808 - 3677853
Alignment:
Q  817 accaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||    
T  3677808 accaacaagcccatgcgagatgcactaataagctcgggtggaaaaa 3677853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 862
Target Start/End: Complemental strand, 25539935 - 25539890
Alignment:
Q  817 accaacaagcctgtgcaagacgcactaataagctcgggtggaaaaa 862  Q
    ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  25539935 accaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaa 25539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 798 - 930
Target Start/End: Complemental strand, 15859234 - 15859089
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaa--caagcctgtgcaagacgcactaataagctcgggtgga-----aaaatacaaag---gggaaatcggttgctac 886  Q
    ||||||||||||| ||||||| |||  |||||| ||||||| ||||||||||||||||||||||     |||| ||||||   |||||||||||||| |     
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgccaa 15859135  T
Q  887 acaaactccggctaaaacaaaaaccccttt--aaaaccacccctaa 930  Q
    |||||| ||||||  |||||||||||||||  ||||||||||||||    
T  15859134 acaaacaccggctcgaacaaaaacccctttaaaaaaccacccctaa 15859089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 798 - 929
Target Start/End: Original strand, 33112714 - 33112854
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgg----aaaaataca---aaggggaaatcggttgctacaca 889  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||| ||    ||||| |||   ||||||||||||||||| | |||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcggttgccataca 33112813  T
Q  890 aactccggctaaaacaaaaacccctt-taaaaccaccccta 929  Q
    ||||  ||||  ||||||||||||||  |||||||||||||    
T  33112814 aactttggctcgaacaaaaaccccttaaaaaaccaccccta 33112854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 798 - 859
Target Start/End: Complemental strand, 6575858 - 6575796
Alignment:
Q  798 gaatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtggaa 859  Q
    ||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaa 6575796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 930
Target Start/End: Complemental strand, 10247029 - 10246906
Alignment:
Q  811 ttattaaccaacaagcctgtgcaagacgcactaataagctcgggtgga-aaaataca---aaggggaaatcggttgctacacaaactccggctaaaacaa 906  Q
    ||||||||||||||||| |||||||| ||||||| | | || |||||| |||| |||   ||||| ||||||||||  |||| ||| ||||||  |||||    
T  10247029 ttattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcacac-aacaccggctcgaacaa 10246931  T
Q  907 aaaccccttt-aaaaccacccctaa 930  Q
    |||||||||| ||||||||||||||    
T  10246930 aaacccctttaaaaaccacccctaa 10246906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 847
Target Start/End: Complemental strand, 8002 - 7953
Alignment:
Q  799 aatcggcaaaat-ttattaaccaacaagcctgtgcaagacgcactaataa 847  Q
    |||||||||||| |||||||||||||||||| ||||| | ||||||||||    
T  8002 aatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaataa 7953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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