View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918-Insertion-4 (Length: 952)

Name: NF5918-Insertion-4
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918-Insertion-4
NF5918-Insertion-4
[»] chr5 (4 HSPs)
chr5 (232-950)||(34768604-34769321)
chr5 (112-237)||(34769694-34769819)
chr5 (9-47)||(34769886-34769924)
chr5 (552-631)||(20164389-20164470)
[»] chr4 (4 HSPs)
chr4 (502-636)||(13843084-13843222)
chr4 (502-633)||(13858367-13858500)
chr4 (552-648)||(16461383-16461480)
chr4 (543-647)||(28184330-28184434)
[»] chr2 (3 HSPs)
chr2 (505-639)||(26911140-26911278)
chr2 (560-639)||(32886542-32886623)
chr2 (554-648)||(18906772-18906868)
[»] chr8 (1 HSPs)
chr8 (561-637)||(3053362-3053440)
[»] chr1 (1 HSPs)
chr1 (554-624)||(44058192-44058263)
[»] chr7 (1 HSPs)
chr7 (561-628)||(44397418-44397487)
[»] chr3 (2 HSPs)
chr3 (543-596)||(12059096-12059149)
chr3 (561-639)||(51818413-51818493)


Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 232 - 950
Target Start/End: Complemental strand, 34769321 - 34768604
Alignment:
Q  232 ctctaatcttctccaaaaatatcaattttcactatatcaggccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctt 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34769321 ctctaatcttctccaaaaatatcaattttcactatatcatgccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctt 34769222  T
Q  332 tttccctacacatgtatatgaaggaacttttggcaacaaaataaggttgcaactaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34769221 tttccctacacatgtatatgaaggaacttttggcaacaaaataaggttgcaacgaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtc 34769122  T
Q  432 tcgggaagtgtggggcttgagtcagatgtatccagaatccgatgaagctgaaaaagtagtcgctataatctggagcaactcttatatagacaataactta 531  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| |||||||||||||||    
T  34769121 tcgggaagtgtggggctcgagccagatgtatccagaatccgatgaagctgaaaaagtagtcgct---atttggagcaactcttacatagacaataactta 34769025  T
Q  532 aataaattcatttgacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcattt 629  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||     
T  34769024 aataaattcacttggcacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatgtgactttattattcatcttttaaattttattatt- 34768926  T
Q  630 atatgtgtgtgttcaaataacacgatgaaggtaaggtgtgattcattccatgaataaactacttagacacgatgaaagtgagtacaatacttccatacta 729  Q
     ||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||| |    
T  34768925 -tatgtgtgtgtccaaataacacgatgaagttaaggtgtgagtcatttcatgaataaactacttaaacatgatgaaagtgaatacaatacttccatacca 34768827  T
Q  730 acccgatgaagttatgttgagtatctatcatcaacataaataagaagtatagttttcttaattgtgaatgttagaagaaaaatatatccttgggtttgat 829  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34768826 acccgatgaagttatgttgagtatctatcatcaacataaaaaagaagtatagttttcttaattgtgaatgttagaagaaaaatatatccttggttttgat 34768727  T
Q  830 tgtagcccaagtacactattgcttttgtaaatgtacccaactatgtctagggaaactattttagctc-tataaagtgat-ctcaatttgtccatgctcat 927  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  34768726 tgtagcccaagtacactattgcttttgtaaatgtacccaactatgtttagggaaactattttagctcatatgaagtgatcctcaatttgtccatgctcat 34768627  T
Q  928 cttagcaatagaagaattttttc 950  Q
    |||||||||||||||||||||||    
T  34768626 cttagcaatagaagaattttttc 34768604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 34769819 - 34769694
Alignment:
Q  112 actggttttaaaaagagggaccaaaactttaacttcgataaagcatggaattataaatacatttaatcctttactctgtattttttaaaataaataattg 211  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34769819 actggttttaaaaagagggaccaaaactttaacttcggtaaaacatggaattataaatacatttaatcctttactctttattttttaaaataaataattg 34769720  T
Q  212 gtgtttccaatgctctcttactctaa 237  Q
    ||||||||||||||||||||||||||    
T  34769719 gtgtttccaatgctctcttactctaa 34769694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34769924 - 34769886
Alignment:
Q  9 atcacatcattgtcatgttatcaatgatgatgtcacaac 47  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  34769924 atcacatcattgtcatgttatcagtgatgatgtcacaac 34769886  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 552 - 631
Target Start/End: Original strand, 20164389 - 20164470
Alignment:
Q  552 atacataaatgataaaattaaaaagtgaaatgatattaagtg--atgactttattattcatcttttaaattttatcatttat 631  Q
    ||||||| ||||||||||  |||||||||||||| ||||| |  ||||||| ||||||  ||||||| | ||||||||||||    
T  20164389 atacatagatgataaaatgtaaaagtgaaatgatgttaagcgatatgacttaattatttctcttttatactttatcatttat 20164470  T

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Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 13843084 - 13843222
Alignment:
Q  502 tggagcaactcttatatagacaataacttaaataaa-ttcattt-gacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg--a 597  Q
    ||||||||||||||||||||||  ||| |||||||| || |||| || ||| | ||||| || |||||||| ||||||||||| ||||||| |||||  |    
T  13843084 tggagcaactcttatatagacataaacctaaataaagtttatttcgatacacacacatagatcataaaatttaaaagtgaaataatattaaatgatgtga 13843183  T
Q  598 ctttattattcatcttttaaattttatcatttatatgtg 636  Q
    | ||||||||  |||||||||||||||||||||||||||    
T  13843184 cattattatttctcttttaaattttatcatttatatgtg 13843222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 502 - 633
Target Start/End: Original strand, 13858367 - 13858500
Alignment:
Q  502 tggagcaactcttatatagacaataacttaaataaattcattt-gacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg--ac 598  Q
    ||||||||||||||||||||||  ||| ||||||||||||||| |||||| | |||| ||| |||||||| ||||||||||| || ||||| | ||  |     
T  13858367 tggagcaactcttatatagacataaacctaaataaattcatttcgacacatacacatgaatcataaaatttaaaagtgaaataat-ttaagcggtgtcat 13858465  T
Q  599 tttattattcatcttttaaattttatcatttatat 633  Q
     ||||||||  ||||||||||||||||||||||||    
T  13858466 attattatttttcttttaaattttatcatttatat 13858500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 552 - 648
Target Start/End: Complemental strand, 16461480 - 16461383
Alignment:
Q  552 atacataaatgataaaattaaaaagtgaaatgatattaagtg--atgactttattattcatcttttaaattttatcatttatatgtgtgtgttcaaata 648  Q
    ||||||| ||||||||||| ||||||||||||||||||||||  ||||||  |||||||  |||||||||||||  |||||| |  |||||||||||||    
T  16461480 atacatagatgataaaatttaaaagtgaaatgatattaagtgatatgactaaattattc-ccttttaaattttactatttatgtccgtgtgttcaaata 16461383  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 647
Target Start/End: Original strand, 28184330 - 28184434
Alignment:
Q  543 ttgacacaaatacataaatgataaaatt-aaaaagtgaaatgatattaagtgatg--actttattattcatcttttaaattttatcatttatatgtgtgt 639  Q
    ||||||||||||||||| |||||||||| |||||| ||||  ||||||| |||||  | | |||||||  |||||||||||||||||||  | |||||||    
T  28184330 ttgacacaaatacataa-tgataaaatttaaaaagagaaacaatattaactgatgtgattatattatttttcttttaaattttatcatt--tttgtgtgt 28184426  T
Q  640 gttcaaat 647  Q
    ||||||||    
T  28184427 gttcaaat 28184434  T

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Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 505 - 639
Target Start/End: Original strand, 26911140 - 26911278
Alignment:
Q  505 agcaactcttatatagacaataacttaaat-aaattcatttga-cacaaatacataaatgataaaattaaaaagtgaaatgatattaagtg--atgactt 600  Q
    ||||||||||||| ||| |  ||| ||||| |||||||||||| |||||||||||| || |||||||| |||||||||||| |||||| ||   ||||||    
T  26911140 agcaactcttatagagagacaaacctaaattaaattcatttgaacacaaatacatagataataaaatttaaaagtgaaatgttattaaatggcgtgactt 26911239  T
Q  601 tattattcatcttttaaattttatcatttatatgtgtgt 639  Q
     |||||| |||||||||||||||| |||||| |||||||    
T  26911240 aattatttatcttttaaattttattatttatgtgtgtgt 26911278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 560 - 639
Target Start/End: Original strand, 32886542 - 32886623
Alignment:
Q  560 atgataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcatttatatgtgtgt 639  Q
    ||||||||||| |||| ||||||||||||||||||  |||||| | ||||  || ||||||||||||||||| | |||||||    
T  32886542 atgataaaatttaaaaatgaaatgatattaagtgatgtgacttaactatttctcatttaaattttatcatttgtgtgtgtgt 32886623  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 648
Target Start/End: Complemental strand, 18906868 - 18906772
Alignment:
Q  554 acataaatgataaaattaaaaagtgaaatgatattaagtgatgacttt--attattcatcttttaaattttatcatttatatgtgtgtgttcaaata 648  Q
    |||| |||||||||||| ||||| ||| ||||||||| |||||   ||  |||||| |||||||||||||| ||||| || | | ||||||||||||    
T  18906868 acatgaatgataaaatttaaaagagaattgatattaaatgatgtagttaaattatttatcttttaaattttgtcattcatgtatatgtgttcaaata 18906772  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 637
Target Start/End: Complemental strand, 3053440 - 3053362
Alignment:
Q  561 tgataaaattaaaaagtgaaatgatattaagtgatg--actttattattcatcttttaaattttatcatttatatgtgt 637  Q
    |||||||||| ||||| |||||  ||||||||||||  |||  ||||||  |||||||||||||||||||||| |||||    
T  3053440 tgataaaatttaaaagagaaattttattaagtgatgtgactaaattatttctcttttaaattttatcatttatgtgtgt 3053362  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 624
Target Start/End: Original strand, 44058192 - 44058263
Alignment:
Q  554 acataaatgataaaattaaaaagtgaaatgatattaagtgat-gactttattattcatcttttaaattttat 624  Q
    ||||| ||||||||||| ||||||||||||||||| |||||| ||||  ||||||   ||||||||||||||    
T  44058192 acatagatgataaaatttaaaagtgaaatgatatttagtgatggactaaattatttcccttttaaattttat 44058263  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 628
Target Start/End: Original strand, 44397418 - 44397487
Alignment:
Q  561 tgataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcatt 628  Q
    |||||||||| ||||| ||||| |||||||||||  |||||  ||||||  |||||||||||||||||||    
T  44397418 tgataaaatttaaaagagaaatcatattaagtgatgtgactaaattatttctcttttaaattttatcatt 44397487  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 12059149 - 12059096
Alignment:
Q  543 ttgacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg 596  Q
    |||||||| |||||||||||||||||||  |||| ||||  |||||||||||||    
T  12059149 ttgacacacatacataaatgataaaattttaaagagaaacaatattaagtgatg 12059096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 639
Target Start/End: Complemental strand, 51818493 - 51818413
Alignment:
Q  561 tgataaaattaaaaagtgaaatgatattaagtgatgacttta--ttattcatcttttaaattttatcatttatatgtgtgt 639  Q
    |||||||||| |||||  |||| |||||||||||||   |||  |||||  |||||||||||||||||||||| |||||||    
T  51818493 tgataaaatttaaaagaaaaataatattaagtgatgtgattaaattatttttcttttaaattttatcatttatgtgtgtgt 51818413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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