View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918-Insertion-5 (Length: 935)
Name: NF5918-Insertion-5
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 769; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 8 - 929
Target Start/End: Complemental strand, 39396705 - 39395784
Alignment:
| Q |
8 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396705 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
39396606 |
T |
|
| Q |
108 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
39396605 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtcc |
39396506 |
T |
|
| Q |
208 |
aaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgta |
307 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39396505 |
aaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgta |
39396406 |
T |
|
| Q |
308 |
agaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39396405 |
agaaactctcaaagaagattgataagtactccatg-ccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaa |
39396307 |
T |
|
| Q |
408 |
tctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgt |
507 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39396306 |
tctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgt |
39396207 |
T |
|
| Q |
508 |
cttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacaga |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39396206 |
cttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacaga |
39396107 |
T |
|
| Q |
608 |
cacgaaatagggtctcaaaataggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaa |
707 |
Q |
| |
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| T |
39396106 |
cacgaaatagggtctcaaaataggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaa |
39396008 |
T |
|
| Q |
708 |
agtaaaacaatatgaacaatattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcggg |
807 |
Q |
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| T |
39396007 |
agtaaaacaatatgaacagtattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcggg |
39395908 |
T |
|
| Q |
808 |
tattattatnnnnnnnnnnnnnnnnnctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcag-ctcaga |
906 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39395907 |
tattattattagtagcagtagtagtactttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcaga |
39395808 |
T |
|
| Q |
907 |
atcatc-aaatgtgattcatctaa |
929 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
39395807 |
atcatcaaaatgtgattcatctaa |
39395784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
52 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
126 |
Q |
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|||||||||||||||||||||||| || |||| | |||||| |||||||||| |||||||| |||||||||| |
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| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
273 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
332 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
318 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
392 |
Q |
| |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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