View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918-Insertion-7 (Length: 860)

Name: NF5918-Insertion-7
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918-Insertion-7
NF5918-Insertion-7
[»] chr4 (8 HSPs)
chr4 (215-860)||(54004290-54004927)
chr4 (453-860)||(53988599-53988995)
chr4 (9-174)||(54004097-54004262)
chr4 (767-844)||(8418258-8418336)
chr4 (764-840)||(17467935-17468012)
chr4 (765-818)||(24177997-24178050)
chr4 (764-848)||(28495428-28495513)
chr4 (773-810)||(47109766-47109803)
[»] chr3 (6 HSPs)
chr3 (763-848)||(29383057-29383143)
chr3 (764-848)||(16776795-16776880)
chr3 (764-810)||(15095242-15095289)
chr3 (763-844)||(20113325-20113408)
chr3 (763-840)||(12918754-12918832)
chr3 (763-848)||(35938408-35938490)
[»] chr5 (5 HSPs)
chr5 (763-848)||(26699360-26699445)
chr5 (763-848)||(26969093-26969178)
chr5 (763-844)||(30117156-30117238)
chr5 (764-845)||(37700137-37700219)
chr5 (763-810)||(39971057-39971105)
[»] chr1 (8 HSPs)
chr1 (763-848)||(5966616-5966702)
chr1 (763-841)||(50074453-50074532)
chr1 (763-848)||(26768428-26768514)
chr1 (784-848)||(15624804-15624868)
chr1 (763-840)||(4389652-4389730)
chr1 (766-818)||(35693108-35693161)
chr1 (784-818)||(4371702-4371736)
chr1 (763-848)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (783-848)||(270-335)
[»] chr2 (8 HSPs)
chr2 (764-848)||(4897651-4897736)
chr2 (764-848)||(4945045-4945130)
chr2 (764-848)||(12296337-12296422)
chr2 (763-844)||(12969554-12969636)
chr2 (784-848)||(27725601-27725665)
chr2 (785-840)||(21522929-21522984)
chr2 (783-818)||(26273494-26273529)
chr2 (790-843)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (785-848)||(28017009-28017072)
chr7 (763-848)||(18312232-18312318)
chr7 (764-813)||(20307481-20307530)
chr7 (763-840)||(30534748-30534826)
chr7 (763-840)||(32964311-32964389)
chr7 (763-817)||(47534843-47534897)
chr7 (764-844)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (763-844)||(30734688-30734770)
chr8 (769-848)||(24260862-24260942)
chr8 (783-848)||(30512831-30512897)
chr8 (783-818)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (784-839)||(55993-56048)
[»] chr6 (2 HSPs)
chr6 (785-848)||(8646113-8646176)
chr6 (763-840)||(6418568-6418646)
[»] scaffold0072 (1 HSPs)
scaffold0072 (790-840)||(47226-47276)


Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 215 - 860
Target Start/End: Original strand, 54004290 - 54004927
Alignment:
Q  215 tgattagtgagtttgaatttgaaacctttgaagttgttgggtgatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004290 tgattagtgagtttgaatttgaaacctttgaagttgttgggtgatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtat 54004389  T
Q  315 cagacttaagataatccaaaaacttcttcaccaatggtttctttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004390 cagacttaagataatccaaaaacttcttcaccaatggtttctttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatc 54004489  T
Q  415 cattttcttcaatttctttgaatccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcgg 514  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54004490 cattttcttctttttctttgaatccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaaagttgttttgtttgttttgttggcgg 54004589  T
Q  515 tttacaaacgacacacgtgtccgttttgaggtaaccgctactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaa 614  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||            ||||||||||||||||||    
T  54004590 tttacaaacgacacacgtgtccgttttgaggttaccgctactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaa 54004677  T
Q  615 tcagccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagtta-ttattannnnnnnacaaaa-agg 712  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||        |||||| |||    
T  54004678 tcggccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagttattttttttttttttacaaaagagg 54004777  T
Q  713 gcaaaagtccatcaaacagttctttaaatataagtccatttt-nnnnnnngtttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 810  Q
    |||||||| |||||||||||||||||||||||| ||||||||        |||||||||||||||||| | || ||||||||||||||||||||||||||    
T  54004778 gcaaaagtgcatcaaacagttctttaaatataaatccattttaaaaaaaagtttgtctctttttacaatattcttttgatattttcaagtacattaatta 54004877  T
Q  811 attatttatcaatattctcctatttattttatatctttaccgacatgccc 860  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54004878 attatttattaatattctcctatttattttatatctttaccgacatgccc 54004927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 453 - 860
Target Start/End: Complemental strand, 53988995 - 53988599
Alignment:
Q  453 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggtaaccgc 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  53988995 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacg--acacgtgtccgttttgaggttaccgc 53988898  T
Q  553 tactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatcagccatgtttggtgcttattactttcctgaccccct 652  Q
    |||||||||||||||||||| |||||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53988897 tactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatcggccatgtttggtgcttattactttcctgaccccct 53988810  T
Q  653 tctttgctcacagaccctccagatttttcgaacagttattattannnnnnnacaaaa-agggcaaaagtccatcaaacagttctttaaatataagtccat 751  Q
    ||||||||||||||||||||||||||||||||||||||||  |        |||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  53988809 tctttgctcacagaccctccagatttttcgaacagttatttgtttttttttacaaaagaggacaaaagtgcatcaaacagttctttaaatataagtccat 53988710  T
Q  752 ttt-nnnnnnngtttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttta 849  Q
    |||        |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988709 tttaaaaaaaagtttgtctctttttacaatatccttttgatattttcaagcacattaattaattatttatcaatattctcctatttattttatatcttta 53988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 54004097 - 54004262
Alignment:
Q  9 aatggaaaattgatcacaagtataactaccttgaggtgaaagtggaagctcaataacaggatcatacatatatccttgagatttgagatactcattaaac 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004097 aatggaaaattgataacaagtataactaccttgaggtgaaagtggaagctcaataacaggatcatacatatatccttgagatttgagatactcattaaac 54004196  T
Q  109 cagtgcctctcttttataggtcttttcagctccaccactgtgatcataaacaaattaacacctcat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004197 cagtgcctctcttttataggtcttttcagctccaccactgtgatcataaacaaattaacacctcat 54004262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 767 - 844
Target Start/End: Complemental strand, 8418336 - 8418258
Alignment:
Q  767 tctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 844  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||| |||| ||| || | ||||||||||||||||    
T  8418336 tctctttttataagatccatttggtattttcaagtacattaattaattctttaccaacatacccctatttattttatat 8418258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 840
Target Start/End: Original strand, 17467935 - 17468012
Alignment:
Q  764 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  17467935 ttgtccctttttataagatccctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 17468012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 818
Target Start/End: Complemental strand, 24178050 - 24177997
Alignment:
Q  765 tgtctctttttacaagatcctttgatattttcaagtacattaattaattattta 818  Q
    |||| ||||||| |||| | |||||||||||||||| ||||||||| |||||||    
T  24178050 tgtccctttttataagaccttttgatattttcaagtgcattaattatttattta 24177997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 848
Target Start/End: Original strand, 28495428 - 28495513
Alignment:
Q  764 ttgtctctttttacaagatcctt-tgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||| ||||||| ||||||| | || ||||| ||||| ||||||||| ||||||| ||| || | ||||||||||||| ||||||    
T  28495428 ttgtccctttttataagatccatctggtatttccaagttcattaattatttatttaccaacatacccctatttattttacatcttt 28495513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 810
Target Start/End: Complemental strand, 47109803 - 47109766
Alignment:
Q  773 tttacaagatcctttgatattttcaagtacattaatta 810  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  47109803 tttataagatcctttggtattttcaagtacattaatta 47109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 29383057 - 29383143
Alignment:
Q  763 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| || | | ||||||||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttcaagtacattaattaattctttaccaacatacccttatttattttatatcttt 29383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 764 - 848
Target Start/End: Complemental strand, 16776880 - 16776795
Alignment:
Q  764 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||||||||||| |||| || |||| ||||| |||||||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  16776880 ttgtctctttttataagacccctttgctatttccaagtacattaattaattctttaccaatatacccctatttattttatatcttt 16776795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 810
Target Start/End: Original strand, 15095242 - 15095289
Alignment:
Q  764 ttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 810  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  15095242 ttgtccctttttataagatccctttgatattttcaagtacattaatta 15095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 763 - 844
Target Start/End: Complemental strand, 20113408 - 20113325
Alignment:
Q  763 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatat 844  Q
    |||||||||||||| |||||| |||||||||||  |||||||||| |||| || |||| |||||  | ||||||||||||||||    
T  20113408 tttgtctctttttataagatctctttgatatttcaaagtacattacttaatttttttaccaatacacccctatttattttatat 20113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 840
Target Start/End: Complemental strand, 12918832 - 12918754
Alignment:
Q  763 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  12918832 tttgtccctttttataagatccttttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 12918754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 35938408 - 35938490
Alignment:
Q  763 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||| ||| |  | ||||||||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttcaaatacatta----attatttaccaacacacccctatttattttatatcttt 35938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 26699360 - 26699445
Alignment:
Q  763 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26699360 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26699445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 26969093 - 26969178
Alignment:
Q  763 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26969093 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26969178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 844
Target Start/End: Original strand, 30117156 - 30117238
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 844  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||| |||| ||| |  |  |||||||||||||||    
T  30117156 tttgtctctttttataagactcctttgatatttgtaagtacattaattaattctttaccaacaaacctctatttattttatat 30117238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 764 - 845
Target Start/End: Original strand, 37700137 - 37700219
Alignment:
Q  764 ttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatc 845  Q
    |||| |||||||| |||| ||||||||||||| | |||||||||||||||| |||| ||| ||   |||||||||||||||||    
T  37700137 ttgtttctttttataagactcctttgatatttccgagtacattaattaattctttaccaacatatccctatttattttatatc 37700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 763 - 810
Target Start/End: Original strand, 39971057 - 39971105
Alignment:
Q  763 tttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 810  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  39971057 tttgtccctttttataagatccctttgatattttcaagtacattaatta 39971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 5966616 - 5966702
Alignment:
Q  763 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||||||| |  |||||||||| | | ||||||||||||||||||    
T  5966616 tttgtctctttttataagattcatttgatattttcaagtacgttaattaactcattatcaatatacccttatttattttatatcttt 5966702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 763 - 841
Target Start/End: Original strand, 50074453 - 50074532
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttta 841  Q
    |||||||||||||| |||| | ||||| ||||| |||||||||||||||||| |||| ||| || |||||||||||||||    
T  50074453 tttgtctctttttataagacttctttggtatttccaagtacattaattaattctttaccaacatactcctatttatttta 50074532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 26768428 - 26768514
Alignment:
Q  763 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| ||||||| |||  |||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  26768428 tttgtctctttttataagatcccttttgtatttctaagtacattaattaattctttaccaacatacccctatttattttatatcttt 26768514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 848
Target Start/End: Complemental strand, 15624868 - 15624804
Alignment:
Q  784 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||| |||||||||||||||||||||||| |||| ||| || |  |||||||||||||||||||    
T  15624868 ctttggtattttcaagtacattaattaattctttaccaacatacctctatttattttatatcttt 15624804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 840
Target Start/End: Original strand, 4389652 - 4389730
Alignment:
Q  763 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||| || |||| |||  | ||| ||||||||||    
T  4389652 tttgtctctttttataagatctctttgatatttccaagtacattaattatttctttaccaacctactcttatttatttt 4389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 818
Target Start/End: Original strand, 35693108 - 35693161
Alignment:
Q  766 gtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 818  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  35693108 gtctctttttataagatccctttgatattttcaagcacattaattaatttttta 35693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 818
Target Start/End: Complemental strand, 4371736 - 4371702
Alignment:
Q  784 ctttgatattttcaagtacattaattaattattta 818  Q
    ||||||||||||||||||||||||||| |||||||    
T  4371736 ctttgatattttcaagtacattaattatttattta 4371702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 46083910 - 46083995
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||||| |||  || ||||||||||||||  ||||||||||| | |||| |||||| | || |||||||||||||||||    
T  46083910 tttgtctctttttataagcctcatttgatattttcaaacacattaattaactttttaccaatatac-cccatttattttatatcttt 46083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 783 - 848
Target Start/End: Complemental strand, 335 - 270
Alignment:
Q  783 cctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||| |||||||||| |||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  335 ccttagatattttcatgtacattaattaattatttaccaacatactcatatttattttatatcttt 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 764 - 848
Target Start/End: Complemental strand, 4897736 - 4897651
Alignment:
Q  764 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4897736 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 764 - 848
Target Start/End: Complemental strand, 4945130 - 4945045
Alignment:
Q  764 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4945130 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 764 - 848
Target Start/End: Complemental strand, 12296422 - 12296337
Alignment:
Q  764 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||||||||||| ||||   ||||||||||| |||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  12296422 ttgtctctttttataagacatctttgatatttccaagtacattaattaattctttaccaacatacccctatttattttatatcttt 12296337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 844
Target Start/End: Original strand, 12969554 - 12969636
Alignment:
Q  763 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 844  Q
    |||||||||||||| |||| || |||| ||||||||| || ||||||||||| |||| ||| || | ||||||||||||||||    
T  12969554 tttgtctctttttataagacccctttgttattttcaaatatattaattaattctttaccaacatacccctatttattttatat 12969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 848
Target Start/End: Complemental strand, 27725665 - 27725601
Alignment:
Q  784 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||||||| |||||||||||||| || ||||||||| | | | ||||||||||| ||||||    
T  27725665 ctttgatatttttaagtacattaattatttctttatcaatctacccttatttattttacatcttt 27725601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 785 - 840
Target Start/End: Complemental strand, 21522984 - 21522929
Alignment:
Q  785 tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||||||||||| ||||||||||| ||||||||||| || | | ||||||||||    
T  21522984 tttgatattttcaattacattaattatttatttatcaacatacccttatttatttt 21522929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 818
Target Start/End: Complemental strand, 26273529 - 26273494
Alignment:
Q  783 cctttgatattttcaagtacattaattaattattta 818  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26273529 cctttgatattttcaagtacattaattaattcttta 26273494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 843
Target Start/End: Complemental strand, 14493779 - 14493726
Alignment:
Q  790 tattttcaagtacattaattaattatttatcaatattctcctatttattttata 843  Q
    ||||||||| |||||||||||||| |||| ||| || | |||||||||||||||    
T  14493779 tattttcaaatacattaattaattctttaccaacatacccctatttattttata 14493726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 785 - 848
Target Start/End: Original strand, 28017009 - 28017072
Alignment:
Q  785 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||| |||||||||||||||||||||||| || |||||||  | ||||||||||||||||||||    
T  28017009 tttggtattttcaagtacattaattaattcttgatcaatacacccctatttattttatatcttt 28017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 18312232 - 18312318
Alignment:
Q  763 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    ||||| |||||||| ||||| |||| ||||||||||| |||||||||||||| |||| ||| ||  | |||||||||||||||||||    
T  18312232 tttgtttctttttataagatacttttgatattttcaaatacattaattaattttttaccaacatatttctatttattttatatcttt 18312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 20307530 - 20307481
Alignment:
Q  764 ttgtctctttttacaagatcctttgatattttcaagtacattaattaatt 813  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  20307530 ttgtctctttttataagatcctgtgatattttcaaatacattaattaatt 20307481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 840
Target Start/End: Original strand, 30534748 - 30534826
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  30534748 tttgtccctttttataagactcctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 30534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 840
Target Start/End: Complemental strand, 32964389 - 32964311
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  32964389 tttgtccctttttataagagtcctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 32964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 817
Target Start/End: Complemental strand, 47534897 - 47534843
Alignment:
Q  763 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattattt 817  Q
    |||||| ||||||| || | |||||| ||||||||| ||||||||||||||||||    
T  47534897 tttgtccctttttataaaaccctttgctattttcaactacattaattaattattt 47534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 844
Target Start/End: Complemental strand, 2087282 - 2087201
Alignment:
Q  764 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 844  Q
    ||||||||||||||||||   ||||  |||||||||||||||||||||||| |||| ||| |  | | ||||||||||||||    
T  2087282 ttgtctctttttacaagacatctttagtattttcaagtacattaattaattttttaccaacacacccttatttattttatat 2087201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 763 - 844
Target Start/End: Complemental strand, 30734770 - 30734688
Alignment:
Q  763 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 844  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||| | ||||||||||  | ||||||||||||||||    
T  30734770 tttgtcactttttataagactcatttgatattttcaagtacagtaattaactctttatcaatacacccctatttattttatat 30734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 848
Target Start/End: Complemental strand, 24260942 - 24260862
Alignment:
Q  769 tctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||||||| ||||||| |||||||||| ||||| |||||||||||| |||| ||| || | | ||||||||||||||||||    
T  24260942 tctttttataagatccctttgatatttccaagtgcattaattaattttttaccaacatacccttatttattttatatcttt 24260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 848
Target Start/End: Original strand, 30512831 - 30512897
Alignment:
Q  783 cctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatatcttt 848  Q
    |||||| |||||||||||||||||||||| || |||| ||| || | ||||||||||||||||||||    
T  30512831 cctttggtattttcaagtacattaattaatttttttaccaacatacccctatttattttatatcttt 30512897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 818
Target Start/End: Complemental strand, 19701202 - 19701167
Alignment:
Q  783 cctttgatattttcaagtacattaattaattattta 818  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19701202 cctttgatattttcaagtacattaattaattcttta 19701167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 784 - 839
Target Start/End: Original strand, 55993 - 56048
Alignment:
Q  784 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattt 839  Q
    ||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  55993 ctttggtattttcaagtacatttattaattctttatcaacatactcctatttattt 56048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 785 - 848
Target Start/End: Complemental strand, 8646176 - 8646113
Alignment:
Q  785 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 848  Q
    |||| ||||| |||||||||||||||||| |||| ||  || | ||||||||||||||||||||    
T  8646176 tttgctatttccaagtacattaattaattttttaccaccatacccctatttattttatatcttt 8646113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 840
Target Start/End: Complemental strand, 6418646 - 6418568
Alignment:
Q  763 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  6418646 tttgtccctttttataagacctctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 6418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 840
Target Start/End: Original strand, 47226 - 47276
Alignment:
Q  790 tattttcaagtacattaattaattatttatcaatattctcctatttatttt 840  Q
    |||||||||||||||| ||||||| |||| ||| || ||||||||||||||    
T  47226 tattttcaagtacatttattaattctttaccaacatactcctatttatttt 47276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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