View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918-Insertion-8 (Length: 785)
Name: NF5918-Insertion-8
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 9 - 785
Target Start/End: Complemental strand, 153738 - 152962
Alignment:
| Q |
9 |
aatgaaaccagcagcaactcctaaaatagaaccaaatatctgtccaccacttcaagccattagctaactactatttgttgttgtatccatgtattcaaat |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
153738 |
aatgaaaccagcagcaactcctaaaatcgaaccaaatatctgtccaccacttcaagccattagctaactactatttgttgttgtatccatgtatgcaaat |
153639 |
T |
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| Q |
109 |
caaaaccagtttgaacttaaaagtaaagtaattacataccttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgcc |
208 |
Q |
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| T |
153638 |
caaaaccagtttgaacttaaaagtaaagtaattacataccttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgcc |
153539 |
T |
|
| Q |
209 |
ttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgcagcaccaacccctaaaatcatgttacaaccaacgtacactg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
153538 |
ttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgccgcaccaacccctaaaatcatgttacaaccaacgtacactg |
153439 |
T |
|
| Q |
309 |
caaatgcctcatggtacttttgcttgagcatgagattgtcggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153438 |
caaatgcctcatggtacttttgcttgagcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaac |
153339 |
T |
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| Q |
409 |
aagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttgttcttgacctccagtcctgtttcaat |
508 |
Q |
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| T |
153338 |
aagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttgttcttgacctccagtcctgtttcaat |
153239 |
T |
|
| Q |
509 |
agatcattctcaattaacctgcatagtacatgccaccaaaattaacacatatctcaattgtacttatattcaacacaaacacaacaaacgtttattaaaa |
608 |
Q |
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| T |
153238 |
agatcattctcaattaacctgcatagtacatgccaccaaaattaacatatatctcaattatacttatattcaacacaaacacaacaaaagtttattaaaa |
153139 |
T |
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| Q |
609 |
tattagcacgactctgcaaaagtcgtatcaaaaccgacaatcgcaattcaaaaaacactttgaaagctgtaagccatgaagctatgcacaaaataaaaca |
708 |
Q |
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| T |
153138 |
tattaacacaattctgcaaaagtcgtatcaaaaccgacaatcgcaattcaataaacactttgaaagctgtaagccatgaagctatgcacaaaataaaaca |
153039 |
T |
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| Q |
709 |
tcttccattgttacactatttttaatttacaaaaccctcccattttttgttagaaaacgtgatagttagagaatttg |
785 |
Q |
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| T |
153038 |
tcttccattgttacactatttttaatttacaaaaccctcccattttttgttataaaacgtgatagttagagaatttg |
152962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 24332112 - 24332236
Alignment:
| Q |
146 |
accttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggag |
245 |
Q |
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||||| ||||| ||||| | |||||||| |||||||| ||||| ||||||||||| ||||| || ||||| |||||||||||||| || |||| ||||| |
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| T |
24332112 |
acctttacaaaaagggtggttggggccagaatagaatgagcatcgatgccgttgagatatgctttaacctccggtatgccagagcctgctgctgaaggag |
24332211 |
T |
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| Q |
246 |
caatgtaagcacacagggctgcagc |
270 |
Q |
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| T |
24332212 |
caatgaaagcacagagtgctgcagc |
24332236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 56471562 - 56471667
Alignment:
| Q |
335 |
agcatgagattgtcggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaa |
434 |
Q |
| |
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|||||||||| || |||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||| | ||||| ||||| |||||||||||||| |
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| T |
56471562 |
agcatgagatggttggtgaggagaagcttgaaaccagcaatattctcaacaccaatgttattgaagaaggcgacaagacctgtgcctaaaccaataagaa |
56471661 |
T |
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| Q |
435 |
gtgcaa |
440 |
Q |
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| T |
56471662 |
gtgcaa |
56471667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 298
Target Start/End: Original strand, 56471251 - 56471403
Alignment:
| Q |
146 |
accttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggag |
245 |
Q |
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||||| |||||||| |||| ||| |||||||||||| | ||||||| ||| || || |||||||| ||||| ||||||||||| || || |||||||| | |
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| T |
56471251 |
acctttacaaagagagtaggtggagccaatatagaaggagcatcaacgccattaagatatgccttgacctcaggtatgccagatccggctgctgcagggg |
56471350 |
T |
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| Q |
246 |
caatgtaagcacacagggctgcagcaccaacccctaaaatcatgttacaacca |
298 |
Q |
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| | || || ||||||||||| ||| | | |||||| ||||||||||||| |
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| T |
56471351 |
cgacataggcgcacagggctgctgcagcgatggctaaaaccatgttacaacca |
56471403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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