View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918-Insertion-9 (Length: 705)
Name: NF5918-Insertion-9
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 9 - 664
Target Start/End: Original strand, 43807173 - 43807845
Alignment:
| Q |
9 |
atagttgagcaagatattagaattagattggcttcagaatttttggactgtgaagacggtgtttgaattaccgtaacttcattaagtttggtgatcatcg |
108 |
Q |
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| T |
43807173 |
atagttgagcaagatattagaattagattggcttcagaatttttggactgtgaagacggtgtttgaattactgtaacttcattaagtttggtgatcatcg |
43807272 |
T |
|
| Q |
109 |
caatttgaggtgtgatgcagattctgtcttttctgggagctccctgctgcattgagctttgctaagaagaattggtgaaacgaaggtctgatgcagattt |
208 |
Q |
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| T |
43807273 |
caatttgaggtgtgatgcagattctgtcttttctgggagctccctgctgcattgagctttgctaagaagaattggtgaaatgaaggtctgatgcagattt |
43807372 |
T |
|
| Q |
209 |
attgtagtagtaaacaggagatattagttgcagatgggtaattcttggaacagatatgctaaatgttgcgagaattatcatcacaacaacatcacaaatt |
308 |
Q |
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| T |
43807373 |
attgtagtagtaaacaggagatattagttgcagatgggtaattcttggaacagaaatgctaaatgttgcgcgaattatcatcacgacaacatcacaaatt |
43807472 |
T |
|
| Q |
309 |
gcttttgtttaggtatgcttaataaaaaacctgctgttttatttatgctggtgtaatgtgatctgaagcatttcctatggtgcatgttttaattttgagt |
408 |
Q |
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| T |
43807473 |
gcttttgtttaggtatgcttaataaaaaacctgctgttttatttatgttggtgtaatgtgatctgaagcatttcctatagtgcatgttttaattttgagt |
43807572 |
T |
|
| Q |
409 |
cgaaacaaattttacatcacagccgtatcaagacttg-----------------gactcaaaattttcctgcatggccttctccataatacaaaaatctg |
491 |
Q |
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| T |
43807573 |
cgaaacaaattttacatcacagccgtatcaagacttggattgagaatttgcttcgactcaaaattttcctgcatggccttctccataatacaaaaatctg |
43807672 |
T |
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| Q |
492 |
ttgagttatttctccactaatatttttctttgccatcatacaaccaaccaaactgcagacttaaactaaatagaaatttggtcaaacactaccattgttc |
591 |
Q |
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| T |
43807673 |
ttgagttatttctccactaatatttttctttcccatcatacaaccaaccaaactgcagacttaaactaaatagaaatttggtcaaacactaccattgttc |
43807772 |
T |
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| Q |
592 |
attcattacattgataataattgctaatattgcagcattaaggcaaacacttcccaaaataaggccagaactc |
664 |
Q |
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| T |
43807773 |
attcattacattgataataattgctaatattgcagcattaaggcaaacacttcccaaaataaggtcagaactc |
43807845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 599
Target Start/End: Complemental strand, 38507854 - 38507785
Alignment:
| Q |
530 |
tacaaccaaccaaactgcagacttaaactaaatagaaatttggtcaaacactaccattgttcattcatta |
599 |
Q |
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| T |
38507854 |
tacaaccaaccaaaatacagacttaaactaaaaagaaatgttcccaaacactaccattgttcattcatta |
38507785 |
T |
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