View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_1 (Length: 1210)
Name: NF5918_high_1
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 1038; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1038; E-Value: 0
Query Start/End: Original strand, 17 - 1201
Target Start/End: Complemental strand, 39396705 - 39395523
Alignment:
| Q |
17 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396705 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
39396606 |
T |
|
| Q |
117 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
39396605 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtcc |
39396506 |
T |
|
| Q |
217 |
aaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgta |
316 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39396505 |
aaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgta |
39396406 |
T |
|
| Q |
317 |
agaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaa |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39396405 |
agaaactctcaaagaagattgataagtactccatg-ccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaa |
39396307 |
T |
|
| Q |
417 |
tctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgt |
516 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39396306 |
tctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgt |
39396207 |
T |
|
| Q |
517 |
cttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacaga |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39396206 |
cttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacaga |
39396107 |
T |
|
| Q |
617 |
cacgaaatagggtctcaaaataggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaa |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39396106 |
cacgaaatagggtctcaaaataggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaa |
39396008 |
T |
|
| Q |
717 |
agtaaaacaatatgaacaatattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcggg |
816 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39396007 |
agtaaaacaatatgaacagtattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcggg |
39395908 |
T |
|
| Q |
817 |
tattattatnnnnnnnnnnnnnnnnnctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcaga |
916 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395907 |
tattattattagtagcagtagtagtactttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcaga |
39395808 |
T |
|
| Q |
917 |
atcatcaaaatgtgattcatctaaatgatcaaagtcatcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaat |
1016 |
Q |
| |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395807 |
atcatcaaaatgtgattcatctaaatgatcaaaatcttcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaat |
39395708 |
T |
|
| Q |
1017 |
attgaaccctttagtgtatcatcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgt |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39395707 |
attgaaccctttagtgtatcatcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgt |
39395608 |
T |
|
| Q |
1117 |
cttttatattaagactaaaagttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatg |
1201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395607 |
cttttatattaagactaaaagttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatg |
39395523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
61 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
135 |
Q |
| |
|
|||||||||||||||||||||||| || |||| | |||||| |||||||||| |||||||| |||||||||| |
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|
| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
282 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
341 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
327 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
401 |
Q |
| |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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