View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_high_12 (Length: 582)
Name: NF5918_high_12
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 371244 - 371777
Alignment:
| Q |
19 |
tgttgtgtttttgatgaaatacaatctagctagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatctatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
371244 |
tgttgtgtttttgatgaaatacaatctaggtagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatatatc |
371343 |
T |
|
| Q |
119 |
aattcgatcttacccaatc---taattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaa---------attat |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
371344 |
aattcgatcttacccaatcatctaattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaagaataagaaattat |
371443 |
T |
|
| Q |
207 |
atggtgaggttgtgcttaattggtgggtggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
306 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
371444 |
atggtgaggttgtgctt----ggtggggggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
371539 |
T |
|
| Q |
307 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
371540 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
371639 |
T |
|
| Q |
407 |
caagctgattcgccattcttcttctatcgatccaaccttgc--------------tgttgctgcatctacaagcttggctaaatta---tatttgtcata |
489 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
371640 |
caagttgattcgcca---ttcttctatcgatccaaccttgctattcaacaattaatattgctgcatctacaagcttggctaaattatactatttgtcata |
371736 |
T |
|
| Q |
490 |
tgagacatatacattaatgtgactatataatatatggttgg |
530 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
371737 |
tgagacatagacattaatgtgactatataatatatggttgg |
371777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University