View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_14 (Length: 506)
Name: NF5918_high_14
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 52531273 - 52530914
Alignment:
| Q |
1 |
ctagagttttagtggattattacccattagctgggaggttgagaagttgttcctctaatttggatgatgagaagaagcttgaagtggattgcaatggaga |
100 |
Q |
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| T |
52531273 |
ctagagttttagtggattattacccattagctgggaggttgagaagttgttcctctaatttggatgatgagaagaagcttgaagtggattgcaatggaga |
52531174 |
T |
|
| Q |
101 |
aggtgctttgtttgttgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccatacaagtcatggagaaagttcacttataag |
200 |
Q |
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| T |
52531173 |
aggtgctttgtttgttgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccaaacaagtcatggagaaagttcacttataag |
52531074 |
T |
|
| Q |
201 |
gtggaatctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531073 |
gtggaatctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctatt |
52530974 |
T |
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| Q |
301 |
caatgaacttatgaaacttcttcccctga---tcatatgtaatgtcattcatttatttcc |
357 |
Q |
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| T |
52530973 |
caatgaacttatgaaacttcttcccctgatcatcatatgtaatgtcattcatttatttcc |
52530914 |
T |
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