View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_15 (Length: 500)
Name: NF5918_high_15
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 153263 - 153738
Alignment:
| Q |
9 |
aacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgttgggttctttaataaccttgga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153263 |
aacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgttgggttctttaataaccttgga |
153362 |
T |
|
| Q |
109 |
gttgagaatattgctggtttcaaacttctactcaccaacaatctcatgctcaagcaaaagtaccatgaggcatttgcagtgtacgttggttgtaacatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153363 |
gttgagaatattgctggtttcaaacttctactcaccaacaatctcatgctcaagcaaaagtaccatgaggcatttgcagtgtacgttggttgtaacatga |
153462 |
T |
|
| Q |
209 |
ttttaggggttggtgctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctcaacggcattgatgc |
308 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153463 |
ttttaggggttggtgcggcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctcaacggcattgatgc |
153562 |
T |
|
| Q |
309 |
acattctatattggccccatctaccctctttgtcaaggtatgtaattactttacttttaagttcaaactggttttgatttgaatacatggatacaacaac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
153563 |
acattctatattggccccatctaccctctttgtcaaggtatgtaattactttacttttaagttcaaactggttttgatttgcatacatggatacaacaac |
153662 |
T |
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| Q |
409 |
aaatagtagttagctaatggcttgaagtggtggacagatatttggttctattttaggagttgctgctggtttcatt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
153663 |
aaatagtagttagctaatggcttgaagtggtggacagatatttggttcgattttaggagttgctgctggtttcatt |
153738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 56471667 - 56471562
Alignment:
| Q |
53 |
ttgcacttcttattggtttaattacaggacttgttgggttctttaataaccttggagttgagaatattgctggtttcaaacttctactcaccaacaatct |
152 |
Q |
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|||||||||||||||||||| ||||| ||||| | ||||| |||||| |||| ||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
56471667 |
ttgcacttcttattggtttaggcacaggtcttgtcgccttcttcaataacattggtgttgagaatattgctggtttcaagcttctcctcaccaaccatct |
56471568 |
T |
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| Q |
153 |
catgct |
158 |
Q |
| |
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|||||| |
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| T |
56471567 |
catgct |
56471562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 347
Target Start/End: Complemental strand, 56471403 - 56471251
Alignment:
| Q |
195 |
tggttgtaacatgattttaggggttggtgctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctc |
294 |
Q |
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||||||||||||| |||||| | | ||| ||||||||||| || || | || |||||||| || || ||||||||||| ||||| |||||||| || |
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| T |
56471403 |
tggttgtaacatggttttagccatcgctgcagcagccctgtgcgcctatgtcgcccctgcagcagccggatctggcatacctgaggtcaaggcatatctt |
56471304 |
T |
|
| Q |
295 |
aacggcattgatgcacattctatattggccccatctaccctctttgtcaaggt |
347 |
Q |
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|| ||| ||||||| | |||||||||||| ||| |||| |||||||| ||||| |
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| T |
56471303 |
aatggcgttgatgctccttctatattggctccacctactctctttgtaaaggt |
56471251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 24332236 - 24332112
Alignment:
| Q |
223 |
gctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctcaacggcattgatgcacattctatattgg |
322 |
Q |
| |
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|||||||| || ||||||| |||||||||| |||| || |||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||| |
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| T |
24332236 |
gctgcagcactctgtgctttcattgctccttcagcagcaggctctggcataccggaggttaaagcatatctcaacggcatcgatgctcattctattctgg |
24332137 |
T |
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| Q |
323 |
ccccatctaccctctttgtcaaggt |
347 |
Q |
| |
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||||| | ||||| ||||| ||||| |
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| T |
24332136 |
ccccaaccaccctttttgtaaaggt |
24332112 |
T |
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