View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_high_18 (Length: 474)
Name: NF5918_high_18
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 21132173 - 21132620
Alignment:
| Q |
1 |
atatctagattggagtataatcatgagtcggaatttgcttcatttatttattttctattctcataaacaatctcactcttgttcatgatacttttaaccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21132173 |
atatctagattggagtataatcatgagtcggaatttgcttcatttatttattttctattctcataaacaatctcactcttgttcatgatacttttaaccg |
21132272 |
T |
|
| Q |
101 |
agagagaactcgtgtcttcagttcaacgaactatctacatgattgaggcgaatcaattcgcaaaagtaccacaaactggtatgtgaattaaggcaccaat |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21132273 |
agagagaactcgtgtcttcaattcaacgaactatctacatgattgaggcaaatcaattcgcaaaagtaccacaaactggtatgcgaattaaggcaccaat |
21132372 |
T |
|
| Q |
201 |
tcgcagctgacaagtggataaagattatgtgactatggaccatacaatgattagtggtggaatatagagtgaacactacctcatccaccatgtcaataac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21132373 |
tcgcagctgacaagtggataaagattatgtgactatggaccatacaatgattagtggtggaatatagagtgaacactacctcatccaccatgtcaataac |
21132472 |
T |
|
| Q |
301 |
atatgtattgtctatctataggtgttgaagatttctactccaaaga--ctaaaataatctagaatactctaaaatttgcatcaattatcatttctctatg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21132473 |
atatgtattgtctatctataggtgttgaagatttctactccaaagactctaaaataatctagaatactctaaaatttgcatcaattatcatttctctatg |
21132572 |
T |
|
| Q |
399 |
caagacggcatataaatattgtataatttgcatgaattttaacattac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21132573 |
caagacggcatataaatattgtataatttgcatgaattttaacattac |
21132620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 18661702 - 18661741
Alignment:
| Q |
423 |
aatttgcatgaattttaacattacgtaccattcacaggtt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18661702 |
aatttgcatgaattttaacattacgtaccgtttacaggtt |
18661741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University