View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_high_19 (Length: 463)

Name: NF5918_high_19
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_high_19
NF5918_high_19
[»] chr4 (9 HSPs)
chr4 (1-444)||(54004492-54004927)
chr4 (37-446)||(53988597-53988995)
chr4 (351-428)||(8418258-8418336)
chr4 (348-424)||(17467935-17468012)
chr4 (349-402)||(24177997-24178050)
chr4 (348-432)||(28495428-28495513)
chr4 (357-394)||(47109766-47109803)
chr4 (347-406)||(30191759-30191819)
chr4 (347-394)||(52181130-52181178)
[»] chr3 (7 HSPs)
chr3 (347-432)||(29383057-29383143)
chr3 (348-432)||(16776795-16776880)
chr3 (348-394)||(15095242-15095289)
chr3 (347-428)||(20113325-20113408)
chr3 (347-424)||(12918754-12918832)
chr3 (347-432)||(35938408-35938490)
chr3 (347-394)||(27646252-27646300)
[»] chr5 (6 HSPs)
chr5 (347-432)||(26699360-26699445)
chr5 (347-432)||(26969093-26969178)
chr5 (347-428)||(30117156-30117238)
chr5 (348-429)||(37700137-37700219)
chr5 (347-394)||(39971057-39971105)
chr5 (347-402)||(33819253-33819309)
[»] chr1 (8 HSPs)
chr1 (347-432)||(5966616-5966702)
chr1 (347-425)||(50074453-50074532)
chr1 (347-432)||(26768428-26768514)
chr1 (368-432)||(15624804-15624868)
chr1 (347-424)||(4389652-4389730)
chr1 (350-402)||(35693108-35693161)
chr1 (368-402)||(4371702-4371736)
chr1 (347-432)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (367-432)||(270-335)
[»] chr2 (8 HSPs)
chr2 (348-432)||(4897651-4897736)
chr2 (348-432)||(4945045-4945130)
chr2 (348-432)||(12296337-12296422)
chr2 (347-428)||(12969554-12969636)
chr2 (368-432)||(27725601-27725665)
chr2 (369-424)||(21522929-21522984)
chr2 (367-402)||(26273494-26273529)
chr2 (374-427)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (369-432)||(28017009-28017072)
chr7 (347-432)||(18312232-18312318)
chr7 (348-397)||(20307481-20307530)
chr7 (347-424)||(30534748-30534826)
chr7 (347-424)||(32964311-32964389)
chr7 (347-401)||(47534843-47534897)
chr7 (348-428)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (347-428)||(30734688-30734770)
chr8 (353-432)||(24260862-24260942)
chr8 (367-432)||(30512831-30512897)
chr8 (367-402)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (368-423)||(55993-56048)
[»] chr6 (4 HSPs)
chr6 (369-432)||(8646113-8646176)
chr6 (347-424)||(6418568-6418646)
chr6 (347-394)||(2365039-2365087)
chr6 (368-424)||(2665640-2665696)
[»] scaffold0072 (1 HSPs)
scaffold0072 (374-424)||(47226-47276)
[»] scaffold0294 (1 HSPs)
scaffold0294 (347-402)||(11597-11653)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 54004492 - 54004927
Alignment:
Q  1 ttttcttcaatttctttgaagccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtt 100  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54004492 ttttcttctttttctttgaatccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaaagttgttttgtttgttttgttggcggtt 54004591  T
Q  101 tacaaacgacacacgtgtccgttttgaggtaaccgctactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatc 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||            ||||||||||||||||||||    
T  54004592 tacaaacgacacacgtgtccgttttgaggttaccgctactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatc 54004679  T
Q  201 agccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagtta-ttattannnnnnnacaaaa-agggc 298  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||        |||||| |||||    
T  54004680 ggccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagttattttttttttttttacaaaagagggc 54004779  T
Q  299 aaaagtccatcaaacagttctttaaatataagtccatttt-nnnnnnngtttgtctctttttacaaga-tcctttgatattttcaagtacattaattaat 396  Q
    |||||| |||||||||||||||||||||||| ||||||||        |||||||||||||||||| | || ||||||||||||||||||||||||||||    
T  54004780 aaaagtgcatcaaacagttctttaaatataaatccattttaaaaaaaagtttgtctctttttacaatattcttttgatattttcaagtacattaattaat 54004879  T
Q  397 tatttatcaatattctcctatttattttatatctttaccgacatgccc 444  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54004880 tatttattaatattctcctatttattttatatctttaccgacatgccc 54004927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 37 - 446
Target Start/End: Complemental strand, 53988995 - 53988597
Alignment:
Q  37 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggtaaccgc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  53988995 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacg--acacgtgtccgttttgaggttaccgc 53988898  T
Q  137 tactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatcagccatgtttggtgcttattactttcctgaccccct 236  Q
    |||||||||||||||||||| |||||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53988897 tactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatcggccatgtttggtgcttattactttcctgaccccct 53988810  T
Q  237 tctttgctcacagaccctccagatttttcgaacagttattattannnnnnnacaaaa-agggcaaaagtccatcaaacagttctttaaatataagtccat 335  Q
    ||||||||||||||||||||||||||||||||||||||||  |        |||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  53988809 tctttgctcacagaccctccagatttttcgaacagttatttgtttttttttacaaaagaggacaaaagtgcatcaaacagttctttaaatataagtccat 53988710  T
Q  336 ttt-nnnnnnngtttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttta 433  Q
    |||        |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988709 tttaaaaaaaagtttgtctctttttacaatatccttttgatattttcaagcacattaattaattatttatcaatattctcctatttattttatatcttta 53988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 8418336 - 8418258
Alignment:
Q  351 tctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 428  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||| |||| ||| || | ||||||||||||||||    
T  8418336 tctctttttataagatccatttggtattttcaagtacattaattaattctttaccaacatacccctatttattttatat 8418258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 17467935 - 17468012
Alignment:
Q  348 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  17467935 ttgtccctttttataagatccctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 17468012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 24178050 - 24177997
Alignment:
Q  349 tgtctctttttacaagatcctttgatattttcaagtacattaattaattattta 402  Q
    |||| ||||||| |||| | |||||||||||||||| ||||||||| |||||||    
T  24178050 tgtccctttttataagaccttttgatattttcaagtgcattaattatttattta 24177997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 28495428 - 28495513
Alignment:
Q  348 ttgtctctttttacaagatcctt-tgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||| ||||||| ||||||| | || ||||| ||||| ||||||||| ||||||| ||| || | ||||||||||||| ||||||    
T  28495428 ttgtccctttttataagatccatctggtatttccaagttcattaattatttatttaccaacatacccctatttattttacatcttt 28495513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 47109803 - 47109766
Alignment:
Q  357 tttacaagatcctttgatattttcaagtacattaatta 394  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  47109803 tttataagatcctttggtattttcaagtacattaatta 47109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 30191759 - 30191819
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaa 406  Q
    ||||||| |||||| |||| || ||||||||||  ||||||||||||||||| ||||||||    
T  30191759 tttgtctttttttataagactcatttgatatttcgaagtacattaattaattctttatcaa 30191819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 52181178 - 52181130
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 394  Q
    |||||| ||||||| |||| ||||||||||||| |||||||||||||||    
T  52181178 tttgtccctttttataagactcctttgatatttccaagtacattaatta 52181130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 29383057 - 29383143
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| || | | ||||||||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttcaagtacattaattaattctttaccaacatacccttatttattttatatcttt 29383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 16776880 - 16776795
Alignment:
Q  348 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||||||||||| |||| || |||| ||||| |||||||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  16776880 ttgtctctttttataagacccctttgctatttccaagtacattaattaattctttaccaatatacccctatttattttatatcttt 16776795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 15095242 - 15095289
Alignment:
Q  348 ttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 394  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  15095242 ttgtccctttttataagatccctttgatattttcaagtacattaatta 15095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 20113408 - 20113325
Alignment:
Q  347 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatat 428  Q
    |||||||||||||| |||||| |||||||||||  |||||||||| |||| || |||| |||||  | ||||||||||||||||    
T  20113408 tttgtctctttttataagatctctttgatatttcaaagtacattacttaatttttttaccaatacacccctatttattttatat 20113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 12918832 - 12918754
Alignment:
Q  347 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  12918832 tttgtccctttttataagatccttttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 12918754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 35938408 - 35938490
Alignment:
Q  347 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||| ||| |  | ||||||||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttcaaatacatta----attatttaccaacacacccctatttattttatatcttt 35938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 27646300 - 27646252
Alignment:
Q  347 tttgtctctttttacaagatccttt-gatattttcaagtacattaatta 394  Q
    |||||||||||||| |||| ||||| | |||||||||||||||||||||    
T  27646300 tttgtctctttttataagacccttttggtattttcaagtacattaatta 27646252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 26699360 - 26699445
Alignment:
Q  347 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26699360 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26699445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 26969093 - 26969178
Alignment:
Q  347 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26969093 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26969178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 30117156 - 30117238
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 428  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||| |||| ||| |  |  |||||||||||||||    
T  30117156 tttgtctctttttataagactcctttgatatttgtaagtacattaattaattctttaccaacaaacctctatttattttatat 30117238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 37700137 - 37700219
Alignment:
Q  348 ttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatc 429  Q
    |||| |||||||| |||| ||||||||||||| | |||||||||||||||| |||| ||| ||   |||||||||||||||||    
T  37700137 ttgtttctttttataagactcctttgatatttccgagtacattaattaattctttaccaacatatccctatttattttatatc 37700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 39971057 - 39971105
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 394  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  39971057 tttgtccctttttataagatccctttgatattttcaagtacattaatta 39971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 33819309 - 33819253
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 402  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||||||| ||||    
T  33819309 tttgtctctttttataagattcatttgatatttccaaatacattaattaatttttta 33819253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 5966616 - 5966702
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||||||| |  |||||||||| | | ||||||||||||||||||    
T  5966616 tttgtctctttttataagattcatttgatattttcaagtacgttaattaactcattatcaatatacccttatttattttatatcttt 5966702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 50074453 - 50074532
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttta 425  Q
    |||||||||||||| |||| | ||||| ||||| |||||||||||||||||| |||| ||| || |||||||||||||||    
T  50074453 tttgtctctttttataagacttctttggtatttccaagtacattaattaattctttaccaacatactcctatttatttta 50074532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 26768428 - 26768514
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| ||||||| |||  |||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  26768428 tttgtctctttttataagatcccttttgtatttctaagtacattaattaattctttaccaacatacccctatttattttatatcttt 26768514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 15624868 - 15624804
Alignment:
Q  368 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||| |||||||||||||||||||||||| |||| ||| || |  |||||||||||||||||||    
T  15624868 ctttggtattttcaagtacattaattaattctttaccaacatacctctatttattttatatcttt 15624804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 4389652 - 4389730
Alignment:
Q  347 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||| || |||| |||  | ||| ||||||||||    
T  4389652 tttgtctctttttataagatctctttgatatttccaagtacattaattatttctttaccaacctactcttatttatttt 4389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 35693108 - 35693161
Alignment:
Q  350 gtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 402  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  35693108 gtctctttttataagatccctttgatattttcaagcacattaattaatttttta 35693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 4371736 - 4371702
Alignment:
Q  368 ctttgatattttcaagtacattaattaattattta 402  Q
    ||||||||||||||||||||||||||| |||||||    
T  4371736 ctttgatattttcaagtacattaattatttattta 4371702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 46083910 - 46083995
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||||| |||  || ||||||||||||||  ||||||||||| | |||| |||||| | || |||||||||||||||||    
T  46083910 tttgtctctttttataagcctcatttgatattttcaaacacattaattaactttttaccaatatac-cccatttattttatatcttt 46083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 335 - 270
Alignment:
Q  367 cctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||| |||||||||| |||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  335 ccttagatattttcatgtacattaattaattatttaccaacatactcatatttattttatatcttt 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 4897736 - 4897651
Alignment:
Q  348 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4897736 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 4945130 - 4945045
Alignment:
Q  348 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4945130 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 12296422 - 12296337
Alignment:
Q  348 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||||||||||| ||||   ||||||||||| |||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  12296422 ttgtctctttttataagacatctttgatatttccaagtacattaattaattctttaccaacatacccctatttattttatatcttt 12296337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 12969554 - 12969636
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 428  Q
    |||||||||||||| |||| || |||| ||||||||| || ||||||||||| |||| ||| || | ||||||||||||||||    
T  12969554 tttgtctctttttataagacccctttgttattttcaaatatattaattaattctttaccaacatacccctatttattttatat 12969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 27725665 - 27725601
Alignment:
Q  368 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||||||| |||||||||||||| || ||||||||| | | | ||||||||||| ||||||    
T  27725665 ctttgatatttttaagtacattaattatttctttatcaatctacccttatttattttacatcttt 27725601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 21522984 - 21522929
Alignment:
Q  369 tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||||||||||| ||||||||||| ||||||||||| || | | ||||||||||    
T  21522984 tttgatattttcaattacattaattatttatttatcaacatacccttatttatttt 21522929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 402
Target Start/End: Complemental strand, 26273529 - 26273494
Alignment:
Q  367 cctttgatattttcaagtacattaattaattattta 402  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26273529 cctttgatattttcaagtacattaattaattcttta 26273494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 14493779 - 14493726
Alignment:
Q  374 tattttcaagtacattaattaattatttatcaatattctcctatttattttata 427  Q
    ||||||||| |||||||||||||| |||| ||| || | |||||||||||||||    
T  14493779 tattttcaaatacattaattaattctttaccaacatacccctatttattttata 14493726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 28017009 - 28017072
Alignment:
Q  369 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||| |||||||||||||||||||||||| || |||||||  | ||||||||||||||||||||    
T  28017009 tttggtattttcaagtacattaattaattcttgatcaatacacccctatttattttatatcttt 28017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 18312232 - 18312318
Alignment:
Q  347 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    ||||| |||||||| ||||| |||| ||||||||||| |||||||||||||| |||| ||| ||  | |||||||||||||||||||    
T  18312232 tttgtttctttttataagatacttttgatattttcaaatacattaattaattttttaccaacatatttctatttattttatatcttt 18312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 20307530 - 20307481
Alignment:
Q  348 ttgtctctttttacaagatcctttgatattttcaagtacattaattaatt 397  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  20307530 ttgtctctttttataagatcctgtgatattttcaaatacattaattaatt 20307481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 30534748 - 30534826
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  30534748 tttgtccctttttataagactcctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 30534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 32964389 - 32964311
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  32964389 tttgtccctttttataagagtcctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 32964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 47534897 - 47534843
Alignment:
Q  347 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattattt 401  Q
    |||||| ||||||| || | |||||| ||||||||| ||||||||||||||||||    
T  47534897 tttgtccctttttataaaaccctttgctattttcaactacattaattaattattt 47534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 2087282 - 2087201
Alignment:
Q  348 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 428  Q
    ||||||||||||||||||   ||||  |||||||||||||||||||||||| |||| ||| |  | | ||||||||||||||    
T  2087282 ttgtctctttttacaagacatctttagtattttcaagtacattaattaattttttaccaacacacccttatttattttatat 2087201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 30734770 - 30734688
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 428  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||| | ||||||||||  | ||||||||||||||||    
T  30734770 tttgtcactttttataagactcatttgatattttcaagtacagtaattaactctttatcaatacacccctatttattttatat 30734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 432
Target Start/End: Complemental strand, 24260942 - 24260862
Alignment:
Q  353 tctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||||||| ||||||| |||||||||| ||||| |||||||||||| |||| ||| || | | ||||||||||||||||||    
T  24260942 tctttttataagatccctttgatatttccaagtgcattaattaattttttaccaacatacccttatttattttatatcttt 24260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 30512831 - 30512897
Alignment:
Q  367 cctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatatcttt 432  Q
    |||||| |||||||||||||||||||||| || |||| ||| || | ||||||||||||||||||||    
T  30512831 cctttggtattttcaagtacattaattaatttttttaccaacatacccctatttattttatatcttt 30512897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 402
Target Start/End: Complemental strand, 19701202 - 19701167
Alignment:
Q  367 cctttgatattttcaagtacattaattaattattta 402  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19701202 cctttgatattttcaagtacattaattaattcttta 19701167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 55993 - 56048
Alignment:
Q  368 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattt 423  Q
    ||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  55993 ctttggtattttcaagtacatttattaattctttatcaacatactcctatttattt 56048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 8646176 - 8646113
Alignment:
Q  369 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 432  Q
    |||| ||||| |||||||||||||||||| |||| ||  || | ||||||||||||||||||||    
T  8646176 tttgctatttccaagtacattaattaattttttaccaccatacccctatttattttatatcttt 8646113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 6418646 - 6418568
Alignment:
Q  347 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  6418646 tttgtccctttttataagacctctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 6418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 2365087 - 2365039
Alignment:
Q  347 tttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 394  Q
    |||||| ||||||| |||| |||||||||||||||||||||| ||||||    
T  2365087 tttgtcactttttataagactcctttgatattttcaagtacactaatta 2365039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 2665696 - 2665640
Alignment:
Q  368 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    ||||| |||||||||||| ||| ||||||| |||||||| || ||||||||| ||||    
T  2665696 ctttggtattttcaagtatatttattaattctttatcaacatactcctatttttttt 2665640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 47226 - 47276
Alignment:
Q  374 tattttcaagtacattaattaattatttatcaatattctcctatttatttt 424  Q
    |||||||||||||||| ||||||| |||| ||| || ||||||||||||||    
T  47226 tattttcaagtacatttattaattctttaccaacatactcctatttatttt 47276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 11653 - 11597
Alignment:
Q  347 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 402  Q
    |||||||||||||| |||| || |||| |||||| |||||||||||||| |||||||    
T  11653 tttgtctctttttataagacccctttggtatttttaagtacattaattatttattta 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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