View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_high_20 (Length: 460)
Name: NF5918_high_20
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 18359665 - 18359975
Alignment:
| Q |
16 |
caaaatggtccacctactcaaacgtttggtaagtggtaacggcagaaatggtaaactgtccaaaagaaacaatcaaattggttttaaagatcaagaattt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18359665 |
caaaatggtccacctactcaaacgtttggt-------aacggcagaaatggtatactgtccaaaagaaacaatcaaattggttttaaagatcaagaattt |
18359757 |
T |
|
| Q |
116 |
cgtctgcccaagccagggtaggtggaggaaagctttggcacaaggaaacaaaatcaaagtggataagtctcacagtgtgatagacttacttttgattcat |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18359758 |
cgtctgcccaagccagggtaggtggagaaaagctttggcacaaggaaacaaaatcaaagtggataagtctcacagtgtgatagacttacttttgattcat |
18359857 |
T |
|
| Q |
216 |
ttggggattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctag-aaattcagtcacaccatataacagtgct |
314 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
18359858 |
ttggtgattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctagaaaattcaatcacaccatataagagtgct |
18359957 |
T |
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| Q |
315 |
ctttattttaataaatac |
332 |
Q |
| |
|
|||||||||||||||||| |
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| T |
18359958 |
ctttattttaataaatac |
18359975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 36603263 - 36602953
Alignment:
| Q |
16 |
caaaatggtccacctactcaaacgtttggtaagtggtaacggcagaaatggtaaactgtccaaaagaaacaatcaaattggttttaaagatcaagaattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603263 |
caaaatggtccacctactcaaacgtttggtaa-------cggcagaaatggtatactgtccaaaagaaacaatcaaattggttttaaagatcaagaattt |
36603171 |
T |
|
| Q |
116 |
cgtctgcccaagccagggtaggtggaggaaagctttggcacaaggaaacaaaatcaaagtggataagtctcacagtgtgatagacttacttttgattcat |
215 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603170 |
cgtctgcccaagccagggtaggtggagaaaagctttggcacaaggaaacaaaatcaaagtggataagtctcacagtgtgatagacttacttttgattcat |
36603071 |
T |
|
| Q |
216 |
ttggggattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctag-aaattcagtcacaccatataacagtgct |
314 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
36603070 |
ttggtgattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctagaaaattcaatcacaccatataagagtgct |
36602971 |
T |
|
| Q |
315 |
ctttattttaataaatac |
332 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
36602970 |
ctttattttaataaatac |
36602953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 18360233 - 18360353
Alignment:
| Q |
330 |
tacaaggcagggattatgttactcatcctgaaatgctattttggcatttctaaactttcctcgattgacaatgttttgtttcttgtacttgctcttcgtt |
429 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18360233 |
tacaaggcaaggattatgttactcatcctgaaatgctattttggtatttctaaactttcctcgattgacaatgttttgtttcttgtacttgctcttcgtt |
18360332 |
T |
|
| Q |
430 |
ctttatgattacttgtctgtg |
450 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18360333 |
ctttatgattacttgtctgtg |
18360353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 36602695 - 36602574
Alignment:
| Q |
330 |
tacaaggcagggattatgttactcatcctgaaatgctattttggcatttctaaacttt-cctcgattgacaatgttttgtttcttgtacttgctcttcgt |
428 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602695 |
tacaaggcaaggattatgttactcatcctgaaatgctattttggtatttctaaacttttcctcgattgacaatgttttgtttcttgtacttgctcttcgt |
36602596 |
T |
|
| Q |
429 |
tctttatgattacttgtctgtg |
450 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
36602595 |
tctttatgattacttgtctgtg |
36602574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 41280036 - 41280099
Alignment:
| Q |
90 |
aaattggttttaaagatcaagaatttcgtctgcccaagccagggtaggtggaggaaagctttgg |
153 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||| |||||||||||||| |||||||||| |
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|
| T |
41280036 |
aaattggttttaaatatcaagaattttgtttgtccaagtcagggtaggtggagaaaagctttgg |
41280099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 41279206 - 41279269
Alignment:
| Q |
90 |
aaattggttttaaagatcaagaatttcgtctgcccaagccagggtaggtggaggaaagctttgg |
153 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||| || ||||||||||| |||||||||| |
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|
| T |
41279206 |
aaattggttttaaatatcaagaattttgtttgtccaagtcaaggtaggtggagaaaagctttgg |
41279269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 41279622 - 41279685
Alignment:
| Q |
90 |
aaattggttttaaagatcaagaatttcgtctgcccaagccagggtaggtggaggaaagctttgg |
153 |
Q |
| |
|
|||||||||||||| |||| |||||| || || ||||| |||||||||||||| |||||||||| |
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| T |
41279622 |
aaattggttttaaatatcacgaattttgtttgtccaagtcagggtaggtggagaaaagctttgg |
41279685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 41279465 - 41279394
Alignment:
| Q |
169 |
tcaaagtggataagtctcacagtgtgatagacttacttttgattcatttggggattggttttaatagtttttt |
241 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||| ||| |||||||||| |||| |||| |||||||||| |
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| T |
41279465 |
tcaaagtggatatgtctcatagtgtggcagacttac-tttaattcatttggcaattgattttgatagtttttt |
41279394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 13796333 - 13796270
Alignment:
| Q |
90 |
aaattggttttaaagatcaagaatttcgtctgcccaagccagggtaggtggaggaaagctttgg |
153 |
Q |
| |
|
|||||||||||||| |||||||||| || | ||||| ||||||||||||||||||||||||| |
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|
| T |
13796333 |
aaattggttttaaatatcaagaattgtgttcgtccaagtcagggtaggtggaggaaagctttgg |
13796270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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