View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_21 (Length: 455)
Name: NF5918_high_21
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 253
Target Start/End: Original strand, 43867775 - 43867977
Alignment:
| Q |
51 |
ggatccattaagtacacaccgattcaagttttgacaagttgtcacatcacgccaaaaatagggcaatgaattaaaggatgatttgcggattcgttatgac |
150 |
Q |
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| T |
43867775 |
ggatccattaattacacaccgattcaagttttgacaagttgtcacaacacaccaaaaatagggcaatgaattaaaatatgatttgcggattcgttattac |
43867874 |
T |
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| Q |
151 |
cacatcctgacatacaaaaattgag-aatcggacggaataataccacgatgcactaaattatcttttgtagaccgcatgttatgtagtagacgcactaaa |
249 |
Q |
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| T |
43867875 |
gacatcctaacacac-aaaattgagaaatcagacagaataataccacgacgcactaaattatcctttgtagaccacatgttatgtagtagacgcactaaa |
43867973 |
T |
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| Q |
250 |
ttaa |
253 |
Q |
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|||| |
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| T |
43867974 |
ttaa |
43867977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 32872233 - 32872101
Alignment:
| Q |
324 |
aattttgtttataatta-aaatggaacgattaacttgatatcaaatgattatatattcttcaaattaactttaaataatctcgatcgttgatttaaggca |
422 |
Q |
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| T |
32872233 |
aattttgtttgtaattagaaacggaataagtaacttgatattgaatgattatatattcttcaaattaactttaaataatctcgatcgttgatttaaggca |
32872134 |
T |
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| Q |
423 |
gatgatcaacataggtaacaatagaaaattgga |
455 |
Q |
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| T |
32872133 |
gatgatcaacataggtaacaaaagaaaattgga |
32872101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 38029532 - 38029415
Alignment:
| Q |
102 |
ccaaaaatagggcaatgaattaaaggatgatttgcggattcgttatgaccacatcctgacatacaaaaattgagaatcggacggaataataccacgatgc |
201 |
Q |
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| T |
38029532 |
ccaaaagtcgggcagtgaattaaaaggtgatttgttgtttcgttattaccacaaccgaacacacataaat-gagaatcaaacggaataataccacgtcgc |
38029434 |
T |
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| Q |
202 |
actaaattatcttttgtag |
220 |
Q |
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| T |
38029433 |
accaaattatcctttgtag |
38029415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 15165086 - 15164876
Alignment:
| Q |
9 |
gaagaatatgcaaattgaataaaaagatcccaggcatgcagaggatccattaagtacacaccgattcaagttttgacaagttgtcacatcacgccaaaaa |
108 |
Q |
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| T |
15165086 |
gaagaatatgaaaactgaataaaatgatccaaaacatgttggagattcactaagtacacaccgatccaagttttgacatgatgccatagcataccgaaaa |
15164987 |
T |
|
| Q |
109 |
tagggcaatgaattaaaggatgatttgcggattcgttatgaccacatcctgacatacaaaaattgagaatcggacggaataataccacgatgcactaaat |
208 |
Q |
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| T |
15164986 |
taggacaatgaattaaatgatgatctgcagatttgttattaccacatcctgacacac-acaatttataatcaaatggaataatactacgacgcactaaat |
15164888 |
T |
|
| Q |
209 |
tatcttttgtag |
220 |
Q |
| |
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|||| ||||||| |
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| T |
15164887 |
tatcctttgtag |
15164876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 18739775 - 18739621
Alignment:
| Q |
65 |
cacaccgattcaagttttgacaagttgtcacatcacgccaaaaatagggcaatgaattaaaggatgatttgcggattcgttatgaccacatcctgacata |
164 |
Q |
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|||||| || |||||||||||| |||| || | || || |||||||| | ||||| ||| |||||||||| || ||| ||| ||||| || |||| | |
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| T |
18739775 |
cacacctatccaagttttgacatgttgccaaaacataccgaaaataggaaagtgaatcaaaagatgatttgcagactcgatattaccacctctagacaca |
18739676 |
T |
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| Q |
165 |
caaaaattgagaatcggacggaataataccacgatgcactaaattatcttttgtag |
220 |
Q |
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| T |
18739675 |
caaaa-ttgagaatcagacggaataatactgcgacgcactaagttgtcctttgtag |
18739621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 33069224 - 33069288
Alignment:
| Q |
114 |
caatgaattaaaggatgatttgcggattcgttatgaccacatcctgacatacaaaaattgagaatc |
179 |
Q |
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| T |
33069224 |
caatgaattaaaagatgatctgccgattcattatcaccacatcctgacacac-ataattgagaatc |
33069288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 32797412 - 32797352
Alignment:
| Q |
102 |
ccaaaaatagggcaatgaattaaaggatgatttgcggattcgttatgaccacatcctgaca |
162 |
Q |
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| T |
32797412 |
ccaaaaataggacaatgaattagaagatgatctgcaaattcattatgaccacatccggaca |
32797352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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