View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_3 (Length: 991)
Name: NF5918_high_3
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 833; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 19 - 982
Target Start/End: Complemental strand, 39396484 - 39395523
Alignment:
| Q |
19 |
ccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39396484 |
ccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattg |
39396385 |
T |
|
| Q |
119 |
ataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtactt |
218 |
Q |
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| T |
39396384 |
ataagtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtactt |
39396286 |
T |
|
| Q |
219 |
tttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39396285 |
tttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattg |
39396186 |
T |
|
| Q |
319 |
ttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39396185 |
ttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaat |
39396086 |
T |
|
| Q |
419 |
aggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacaata |
518 |
Q |
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| T |
39396085 |
aggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacagta |
39395987 |
T |
|
| Q |
519 |
ttacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattatnnnnnnnnnnnn |
618 |
Q |
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| T |
39395986 |
ttacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattattagtagcagtag |
39395887 |
T |
|
| Q |
619 |
nnnnnctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatc |
718 |
Q |
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| T |
39395886 |
tagtactttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatc |
39395787 |
T |
|
| Q |
719 |
taaatgatcaaagtcatcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatca |
818 |
Q |
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| T |
39395786 |
taaatgatcaaaatcttcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatca |
39395687 |
T |
|
| Q |
819 |
tcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaag |
918 |
Q |
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| T |
39395686 |
tcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaag |
39395587 |
T |
|
| Q |
919 |
ttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatg |
982 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395586 |
ttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatg |
39395523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
63 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
122 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
108 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
182 |
Q |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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