View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_32 (Length: 402)
Name: NF5918_high_32
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 133 - 385
Target Start/End: Complemental strand, 4745102 - 4744849
Alignment:
| Q |
133 |
ccacctatatattaacaataaattcttctttttcttctnnnnnnntaataattcttctttcccaatattttgtttaaaatgtaattgtcgatgatagtaa |
232 |
Q |
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| T |
4745102 |
ccacctatatattaacaataaattcttctttttcttctaaaaaaataataattcttgtttcccaatattttgtttaaaatgtaatcgtcattgatagtaa |
4745003 |
T |
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| Q |
233 |
ttataatagttacttcctccgtctcattttaattgtatcttaagaaatttttctaaatctcaaaataattttgatttttaaatatcaatgcaaatgtaac |
332 |
Q |
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| T |
4745002 |
ttataatagttacttcctccgtctcattttaattgtatcttaaggaatttttctaaatctcaaaataattttgatttttaaatatcaatgcaaatgtaac |
4744903 |
T |
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| Q |
333 |
caaaaaagaatatcaatgcaaca-nnnnnnncattaatataacattatttattt |
385 |
Q |
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| T |
4744902 |
caaaaaagaatatcaatgctacattttttttcattaatataacattatttattt |
4744849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4745302 - 4745169
Alignment:
| Q |
1 |
taaggaagattttgattgtagaattcgtagttgtgcatatccccttgttccggtgtgtattgatcccttttgtcgttgtcgccgtgcttctatttgaaaa |
100 |
Q |
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| T |
4745302 |
taaggaagattttgattgtagaattcgtagttgtgcatatccccttattccagtgtgtattgatcccttttgtcgttgtcgccgtgcttctatttgaaaa |
4745203 |
T |
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| Q |
101 |
caaaactttgtgataagagattgataatgtaacc |
134 |
Q |
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| T |
4745202 |
caaaactttgtgataagagattgataatgtaacc |
4745169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 322
Target Start/End: Complemental strand, 4751900 - 4751760
Alignment:
| Q |
182 |
aattcttctttcccaatattttgtttaaaatgtaattgtcgatgatagtaattataatagttacttcctccgtctcattttaattgtatcttaagaaatt |
281 |
Q |
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| T |
4751900 |
aattcttctttcccaatatttttgttgacatgtaattgttgatcatagtaattataataattacttcctccgtctcattttaattgtatctttagcaatt |
4751801 |
T |
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| Q |
282 |
tttctaaatctcaaaataattttgatttttaaatatcaatg |
322 |
Q |
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| T |
4751800 |
tttctatgttttaaaataattttcattttataatatcaatg |
4751760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 4739914 - 4739823
Alignment:
| Q |
182 |
aattcttctttcccaatattttgtttaaaatgtaattgtcgatgatagtaattataatagttacttcctccgtctcattttaattgtatctt |
273 |
Q |
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| T |
4739914 |
aattcttctttcccaatattttgtctgaaatgtaattgtggatgatagtaattataatagttactccctgcgtcttattttaattgtatctt |
4739823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 4731554 - 4731503
Alignment:
| Q |
193 |
cccaatattttgtttaaaatgtaattgtcgatgatagtaattataatagtta |
244 |
Q |
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| T |
4731554 |
cccaatattttgtttgaaatgtaaatgtcgatgatagtaattgtaattgtta |
4731503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 4734476 - 4734414
Alignment:
| Q |
182 |
aattcttctttcccaatattttgtttaaaatgtaattgtcgatgatagtaattataatagtta |
244 |
Q |
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|||||||||| || ||| |||| ||| |||||||| |||||||||||||||||||| |||||| |
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| T |
4734476 |
aattcttcttccctaattttttctttgaaatgtaaatgtcgatgatagtaattatactagtta |
4734414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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