View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_34 (Length: 388)
Name: NF5918_high_34
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 14743208 - 14742857
Alignment:
| Q |
16 |
atcatagcaaccaatgaaatgaagaacctcagatcatggattgtccacgttgttacctaatccatccttttcataacaaaatccacgtcactcatgtgtc |
115 |
Q |
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| T |
14743208 |
atcatagcaaccaatgaaatgaagaacctcagatcatggattgtccacgttgttacctaatccatccttttcataacaaaatccacgtcactcatgtgtc |
14743109 |
T |
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| Q |
116 |
tttgtttattttcttcttctgtccatacaacaacnnnnnnnggaatcaaaagattcatcattcactttccttcctcacctcaaatccaccactttgctgt |
215 |
Q |
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| T |
14743108 |
tttgtttattttcttcttctgtccatacaacaacaaaaaaaggaatcaaaagattcatcattcactttccttcctcacctcaaatccaccactttgctgt |
14743009 |
T |
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| Q |
216 |
tcatattcataaccaatagaaaattaaatgcctaagacttctagaccataatttaattggtttaattgaaaaataatatataaaaaaccaattaaaccag |
315 |
Q |
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| T |
14743008 |
tcatattcataaccaatagaaaattaaatgcctaagacttctacaccataatttaattggtttaattgaaaaataatataaaaaaaaccaattaaaccag |
14742909 |
T |
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| Q |
316 |
ctttgattccgttcagattgaccaatcaacttcaactagtgatagtttgggc |
367 |
Q |
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| T |
14742908 |
ctttgattccgttcagattgaccaatcaacttcaactagtgatagtttgggc |
14742857 |
T |
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