View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_42 (Length: 295)
Name: NF5918_high_42
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 36675972 - 36675688
Alignment:
| Q |
11 |
gataattctaattctgtagctactattggtgaaaaagttggtgagattcaatcttgcattgctgacatagaagtgacaatggtggaaaaccatgcaaatc |
110 |
Q |
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| T |
36675972 |
gataattctaattctgtagctactattggtgaaaaagttggtgagattcaatcttgcattgctgacatagaagtgacaatggtggaaaaccatgcaaatc |
36675873 |
T |
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| Q |
111 |
ttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgtctcacaatcttgcatttaaatgttactactac |
210 |
Q |
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| T |
36675872 |
ttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgtctcacaatcttgcatttaaatgttactactat |
36675773 |
T |
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| Q |
211 |
tggtgaaattgttctttactctctcagtgttaaggtttgtgtttgttatttcttttcactttttcttgttgctttagatttcttt |
295 |
Q |
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| T |
36675772 |
tggtgaaattgttctttactctctcagtgttaaggtttgtgtttgttatttcttttcactttttcttgttgctttagatttcttt |
36675688 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 46922272 - 46922450
Alignment:
| Q |
68 |
attgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgc |
167 |
Q |
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| T |
46922272 |
attgctgatattgaagttacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttgc |
46922371 |
T |
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| Q |
168 |
aaaacatgcgtctcacaatcttgcatttaaatgttactactactggtgaaattgttctttactctctcagtgttaaggt |
246 |
Q |
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| T |
46922372 |
atggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgtcttctattctctcagcgttaaggt |
46922450 |
T |
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