View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_high_45 (Length: 279)

Name: NF5918_high_45
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_high_45
NF5918_high_45
[»] chr6 (10 HSPs)
chr6 (17-272)||(2997480-2997735)
chr6 (17-264)||(2659091-2659341)
chr6 (17-224)||(2934339-2934546)
chr6 (17-224)||(3003906-3004119)
chr6 (147-272)||(2964370-2964495)
chr6 (17-224)||(2926900-2927107)
chr6 (17-224)||(2951682-2951889)
chr6 (17-223)||(2982612-2982818)
chr6 (17-224)||(2973753-2973960)
chr6 (17-98)||(2964228-2964309)
[»] scaffold0024 (1 HSPs)
scaffold0024 (51-237)||(35345-35528)
[»] chr7 (2 HSPs)
chr7 (51-98)||(3338955-3339002)
chr7 (147-199)||(3339039-3339091)
[»] chr3 (4 HSPs)
chr3 (26-105)||(49618144-49618223)
chr3 (169-224)||(49618306-49618361)
chr3 (167-272)||(49613323-49613428)
chr3 (52-105)||(49613190-49613243)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 2997735 - 2997480
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  2997735 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagataccactatgg 2997636  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997635 tgggtttgtctttgaactttggttcgatgatggtataacaacaaatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 2997536  T
Q  217 ctttcattcagttctacaaatactagtaatcctaacactaggatcccttcttttct 272  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  2997535 ctttcattcagttctacaaatgctagtaatcctaacactatgatcccttgttttct 2997480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 2659341 - 2659091
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| | || | ||   ||||     
T  2659341 gttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatga 2659242  T
Q  117 tg---ggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttac 213  Q
    ||   ||||| | ||| ||| |||||| |||||||||||| ||  ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2659241 tgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttac 2659142  T
Q  214 agtctttcattcagttctacaaatactagtaatcctaacactaggatccct 264  Q
    |  |||||||  |||||||||||| |||||  |||||| |||| |||||||    
T  2659141 aaactttcatcgagttctacaaatgctagtgttcctaagactacgatccct 2659091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 2934339 - 2934546
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||||| ||||||| | |||| ||   ||||     
T  2934339 gttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttataattcaacttttttggagagactattatga 2934438  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
     |||  | ||||| ||| || ||| |||  ||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2934439 agggcgtctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2934538  T
Q  217 ctttcatt 224  Q
    ||||||||    
T  2934539 ctttcatt 2934546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 3004119 - 3003906
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatg- 115  Q
    ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| ||||||| | |||| ||   ||||     
T  3004119 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagatactattatga 3004020  T
Q  116 --gtgggt---ttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatt 210  Q
      || |||   || ||||| ||| |||||| ||| ||||||||| ||  ||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  3004019 tcgtcggtgcattctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatt 3003920  T
Q  211 tacagtctttcatt 224  Q
    ||||||||||||||    
T  3003919 tacagtctttcatt 3003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 2964370 - 2964495
Alignment:
Q  147 tggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatactagtaat 246  Q
    |||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||  |    
T  2964370 tggtataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgtt 2964469  T
Q  247 cctaacactaggatcccttcttttct 272  Q
    ||||||||||  ||||||||||||||    
T  2964470 cctaacactaacatcccttcttttct 2964495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 2926900 - 2927107
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||| ||||||| | || |  |   || |     
T  2926900 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttataattcaacttttttggacatcctattacga 2926999  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
     |||| | ||||| ||| |||||| ||| ||||||||| |   ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2927000 agggtgtctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2927099  T
Q  217 ctttcatt 224  Q
    ||||||||    
T  2927100 ctttcatt 2927107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 2951682 - 2951889
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| ||||||| | || |  |   ||||     
T  2951682 gttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggacatcctgttatga 2951781  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
     |||    ||||| ||| |||||| | |  |||||||| |   ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2951782 aggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2951881  T
Q  217 ctttcatt 224  Q
    ||||||||    
T  2951882 ctttcatt 2951889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 2982612 - 2982818
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |    |||||    
T  2982612 gttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagaaaatattatgg 2982711  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
    ||||  | ||||| ||| ||||||  |   |  ||||  |   ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2982712 tggggctctctttcaaccttggttaaaaagtcttatattatatgatgtactgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2982811  T
Q  217 ctttcat 223  Q
    | |||||    
T  2982812 cgttcat 2982818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 2973753 - 2973960
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatgg 116  Q
    |||||||  |||||||| ||||||||| || || ||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||  |   | ||     
T  2973753 gttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattgaacatttattgagatcctgttgtga 2973852  T
Q  117 tgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 216  Q
     ||   | ||||  ||| ||||||  || ||| |||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2973853 aggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2973952  T
Q  217 ctttcatt 224  Q
     |||||||    
T  2973953 atttcatt 2973960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 2964228 - 2964309
Alignment:
Q  17 gttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaactttt 98  Q
    ||||||| ||||| ||||||||||||| | ||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  2964228 gttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggttttataattgaactttt 2964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 35528 - 35345
Alignment:
Q  51 acttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggt 150  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| | || | |  | || |   | |||  | | |||| |||||| |||| ||||    
T  35528 acttgttaagttaatcttaatcgattccggttttataattcaacttttttggaaatattt-taagaaagattt--cctagaaccttggttagatgctggt 35432  T
Q  151 ataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaat 237  Q
    |||| | |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |  ||||||||||||    
T  35431 ataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttcgtggagttctacaaat 35345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 3338955 - 3339002
Alignment:
Q  51 acttgttaagttaatcttaatcgattccggttttataattgaactttt 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  3338955 acttgttaagttaatcttaatcgattccggttttataattcaactttt 3339002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 3339039 - 3339091
Alignment:
Q  147 tggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgtta 199  Q
    ||||||| || |||||||| |||||||||||||||| ||||||||||||||||    
T  3339039 tggtatatcatcagatttattgttacttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 49618144 - 49618223
Alignment:
Q  26 aaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgaga 105  Q
    ||||||||| |||| ||| | ||| | ||||||||||||||||||| |||||||| || |||||||| ||||||| ||||    
T  49618144 aaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattccgggttcataattgagcttttctggaga 49618223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 49618306 - 49618361
Alignment:
Q  169 ttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcatt 224  Q
    |||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  49618306 ttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttcatt 49618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 49613323 - 49613428
Alignment:
Q  167 tgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatactagtaatcctaacactaggatcccttc 266  Q
    ||||||||||||||||| | || ||||| |||||| || ||||||||| ||||||||| | |||||| ||  |||||  ||| || ||||  ||||||||    
T  49613323 tgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctactaacgctagtgttcccaagactaaaatcccttc 49613422  T
Q  267 ttttct 272  Q
    ||||||    
T  49613423 ttttct 49613428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 49613190 - 49613243
Alignment:
Q  52 cttgttaagttaatcttaatcgattccggttttataattgaacttttcttgaga 105  Q
    |||||| | ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  49613190 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggaga 49613243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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