View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_high_47 (Length: 265)
Name: NF5918_high_47
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 43054718 - 43054960
Alignment:
| Q |
14 |
gaatgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054718 |
gaatgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagttt |
43054817 |
T |
|
| Q |
114 |
aaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054818 |
aaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagt |
43054917 |
T |
|
| Q |
214 |
ttttgaccagaaaaaacaccggtcatgggattgctattcttct |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054918 |
ttttgaccagaaaaaacaccggtcatgggattgctattcttct |
43054960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 43062002 - 43062158
Alignment:
| Q |
47 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
146 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| ||| | | | ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
|
| Q |
147 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgag |
203 |
Q |
| |
|
| |||||||||||||| |||| |||||| |||| ||||| | ||||||||||||||| |
|
|
| T |
43062102 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
43062158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 43024146 - 43024230
Alignment:
| Q |
127 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaata |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| || | ||||| ||||||||||||||||| |
|
|
| T |
43024146 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaata |
43024230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 43049276 - 43049375
Alignment:
| Q |
106 |
ccaagtttaaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagca |
205 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| |||||||||||||||||||| || || |||| |||||||| ||||| || | |||||| ||||||||| |
|
|
| T |
43049276 |
ccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagca |
43049375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University