View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_52 (Length: 252)
Name: NF5918_high_52
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 28699215 - 28699018
Alignment:
| Q |
39 |
cttggtacatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag |
138 |
Q |
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| T |
28699215 |
cttggtccatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag |
28699116 |
T |
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| Q |
139 |
ccttatcggaaatcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaattcggctaattaatatggaactcggcacaca |
236 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
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| T |
28699115 |
ccttatcggaaagcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaactcggctaattaatatggaactgggcgcaca |
28699018 |
T |
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