View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_53 (Length: 251)
Name: NF5918_high_53
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29700961 - 29700725
Alignment:
| Q |
1 |
tagtagctcttgtggaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggc |
100 |
Q |
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| T |
29700961 |
tagtagctcttgtggaggtggttctacttcaggaagatcaatcagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggc |
29700862 |
T |
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| Q |
101 |
atgcctggaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattc |
200 |
Q |
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| T |
29700861 |
atgcctggaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattc |
29700762 |
T |
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| Q |
201 |
ctggtgcaggaatgaagatgagttctgatttcttgtt |
237 |
Q |
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| T |
29700761 |
ctggtgcaggaatgaagatgagttctgaattcttgtt |
29700725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 29678494 - 29678255
Alignment:
| Q |
8 |
tcttgtggaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcctg |
107 |
Q |
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|||| ||| |||| ||| |||| ||||||||||||||||| ||||| |||||| || ||||||||||||||| |||||||||| ||| || | || |
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| T |
29678494 |
tcttttggtggtgattcaacttgaggaagatcaatgagtttgatttgaggttgtaagtttaaaactgatttgatgtatgaatctgaaaatggtgtatgtg |
29678395 |
T |
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| Q |
108 |
gaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggtgc |
207 |
Q |
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| T |
29678394 |
gaaatttgatgcaaaggactgtgatgaaaatattgttgtgagtgttgattaagagttttgcaaattcaagtgatgaaactaagtggccaatatctggtga |
29678295 |
T |
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| Q |
208 |
aggaatgaagatgagttctgatttcttgttcttctcactc |
247 |
Q |
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| T |
29678294 |
gggaatgaagataagttctgctttcttctccatctcactc |
29678255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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