View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_high_55 (Length: 248)

Name: NF5918_high_55
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_high_55
NF5918_high_55
[»] chr8 (4 HSPs)
chr8 (1-87)||(16623176-16623262)
chr8 (152-233)||(16623030-16623111)
chr8 (185-229)||(26029524-26029568)
chr8 (158-215)||(104795-104853)
[»] chr6 (3 HSPs)
chr6 (157-230)||(16189963-16190036)
chr6 (156-210)||(17340201-17340255)
chr6 (1-54)||(16190139-16190192)
[»] chr2 (5 HSPs)
chr2 (158-230)||(797532-797604)
chr2 (1-81)||(35717004-35717083)
chr2 (156-222)||(35716886-35716952)
chr2 (1-66)||(797619-797686)
chr2 (155-183)||(18067291-18067319)
[»] chr4 (6 HSPs)
chr4 (1-86)||(19189616-19189705)
chr4 (17-86)||(17692912-17692981)
chr4 (172-230)||(1549488-1549546)
chr4 (155-227)||(21211517-21211589)
chr4 (1-42)||(53786838-53786879)
chr4 (163-215)||(19189783-19189834)
[»] chr3 (1 HSPs)
chr3 (155-215)||(44864607-44864667)
[»] chr1 (2 HSPs)
chr1 (161-225)||(43992315-43992379)
chr1 (155-199)||(45463688-45463732)
[»] chr5 (1 HSPs)
chr5 (155-212)||(6394779-6394836)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16623262 - 16623176
Alignment:
Q  1 caagcgataaacaagataatattgatgtggtggaatttagaagtgaagatgaggaagacgcagatgcagaagcgtgattttgattag 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16623262 caagcgataaacaagataatattgatgtggtggaatttagaagtgaagatgaggaagacgcagatgcagaagcatgattttgattag 16623176  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 16623111 - 16623030
Alignment:
Q  152 ggagggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagtatgatcat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16623111 ggagggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagtatgatcat 16623030  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 26029524 - 26029568
Alignment:
Q  185 attttgatgtgaaatgacaaagttgattatagttattaagtatga 229  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  26029524 attttgatgagaaatgacaaagttgattataattattaagtatga 26029568  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 104795 - 104853
Alignment:
Q  158 atgtcattttgattacatttagaac-taattttgatgtgaaatgacaaagttgattata 215  Q
    ||||||||||||||||||||||||| | ||| ||||  |||||||||||||||||||||    
T  104795 atgtcattttgattacatttagaacttgattctgataggaaatgacaaagttgattata 104853  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 16190036 - 16189963
Alignment:
Q  157 gatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagtatgat 230  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  16190036 gatgtcattatgattacatttagaactaattttgatggaaaatgacaaagttggttatagttattaagtatgat 16189963  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 17340201 - 17340255
Alignment:
Q  156 ggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttga 210  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||    
T  17340201 ggatgtccttttgattacatttagaacttattttgatgggaaatggcaaagttga 17340255  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16190192 - 16190139
Alignment:
Q  1 caagcgataaacaagataatattgatgtggtggaatttagaagtgaagatgagg 54  Q
    |||| ||| ||||||||||||||||||||||| || ||||||||||| ||||||    
T  16190192 caagggatgaacaagataatattgatgtggtgaaacttagaagtgaatatgagg 16190139  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 797604 - 797532
Alignment:
Q  158 atgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagtatgat 230  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||  |||||||||||||    
T  797604 atgtcagtttgattacatttagaacttattttgatgggaaatgacaaagttaattataactattaagtatgat 797532  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35717083 - 35717004
Alignment:
Q  1 caagcgataaacaagataatattgatgtggtggaatttagaagtgaagatgaggaagacgcagatgcagaagcgtgatttt 81  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||| |||||||    
T  35717083 caagtgatgaacaagataatattgatgtggtggaacttagaagtgaagatgaggcagacgcaga-gcggaagcatgatttt 35717004  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 35716952 - 35716886
Alignment:
Q  156 ggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttatta 222  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||| ||||||    
T  35716952 ggatgtcattttgattacatttacaacttattttgatgggaaatgacgaagttgattataattatta 35716886  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 797686 - 797619
Alignment:
Q  1 caagcgataaacaagataatattgatgtggtgga--atttagaagtgaagatgaggaagacgcagatg 66  Q
    |||| ||| |||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  797686 caagtgatgaacaagatgatattgatgtggtggagaacttagaagtgaagatgaggaagacgcagatg 797619  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 18067291 - 18067319
Alignment:
Q  155 gggatgtcattttgattacatttagaact 183  Q
    |||||||||||||||||||||||||||||    
T  18067291 gggatgtcattttgattacatttagaact 18067319  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19189616 - 19189705
Alignment:
Q  1 caagcgataaacaagataatattgatgt----ggtggaatttagaagtgaagatgaggaagacgcagatgcagaagcgtgattttgatta 86  Q
    |||| ||| |||||||||||||||||||    ||||||| |||||| ||||||||||| || ||||||||| ||||| ||||||||||||    
T  19189616 caagtgatgaacaagataatattgatgtatgtggtggaacttagaattgaagatgaggcagccgcagatgcggaagcatgattttgatta 19189705  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 17692981 - 17692912
Alignment:
Q  17 taatattgatgtggtggaatttagaagtgaagatgaggaagacgcagatgcagaagcgtgattttgatta 86  Q
    ||||||||||||||||||| ||||||||||||||||||  |||  ||| || ||||| ||||||||||||    
T  17692981 taatattgatgtggtggaacttagaagtgaagatgaggccgacatagacgcggaagcatgattttgatta 17692912  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 1549488 - 1549546
Alignment:
Q  172 acatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagtatgat 230  Q
    ||||||||| ||||||| |||| || ||||||||||| |||||| ||||||||| ||||    
T  1549488 acatttagagctaatttagatgggatatgacaaagtttattataattattaagtttgat 1549546  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 21211589 - 21211517
Alignment:
Q  155 gggatgtcattttgattacatttagaacta-attttgatgtgaaatgacaaagttgattatagttattaagtat 227  Q
    |||||||| |||||||||| |||||||||  |||||||||  ||||||||||||| |||||| ||||| |||||    
T  21211589 gggatgtc-ttttgattacttttagaacttcattttgatggaaaatgacaaagttaattataattattgagtat 21211517  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 53786838 - 53786879
Alignment:
Q  1 caagcgataaacaagataatattgatgtggtggaatttagaa 42  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  53786838 caagtgataaacaagataatattgatttggtggaacttagaa 53786879  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 19189783 - 19189834
Alignment:
Q  163 attttgattacatttagaactaattttgatgtgaaatgacaaagttgattata 215  Q
    ||||||||||||||||| ||| |||| |||| ||||||||||| |||||||||    
T  19189783 attttgattacatttagtacttattt-gatgggaaatgacaaatttgattata 19189834  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 44864667 - 44864607
Alignment:
Q  155 gggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattata 215  Q
    ||||||||||||||||||||||||||||| |||||| || ||| |||||||||| ||||||    
T  44864667 gggatgtcattttgattacatttagaacttattttggtgggaattgacaaagttaattata 44864607  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 43992379 - 43992315
Alignment:
Q  161 tcattttgattacatttagaactaattttgatgtgaaatgacaaagttgattatagttattaagt 225  Q
    |||||| ||||||||||||  || |||||||  |||||||||||||||||||||  |||||||||    
T  43992379 tcatttcgattacatttagtgcttattttgacatgaaatgacaaagttgattatgattattaagt 43992315  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 45463688 - 45463732
Alignment:
Q  155 gggatgtcattttgattacatttagaactaattttgatgtgaaat 199  Q
    |||||||||||| ||||||||||||| || ||||||||| |||||    
T  45463688 gggatgtcatttagattacatttagagcttattttgatgagaaat 45463732  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 6394779 - 6394836
Alignment:
Q  155 gggatgtcattttgattacatttagaactaattttgatgtgaaatgacaaagttgatt 212  Q
    |||||||||||||||||| ||| | | || ||||||||| ||||| ||||||||||||    
T  6394779 gggatgtcattttgattatattcaaagcttattttgatgggaaattacaaagttgatt 6394836  T

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