View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_high_58 (Length: 240)

Name: NF5918_high_58
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_high_58
NF5918_high_58
[»] chr3 (11 HSPs)
chr3 (27-113)||(6558830-6558914)
chr3 (27-113)||(6527499-6527585)
chr3 (27-113)||(6849080-6849166)
chr3 (159-225)||(6787259-6787325)
chr3 (51-113)||(6797230-6797292)
chr3 (53-112)||(6938502-6938559)
chr3 (19-63)||(6411128-6411172)
chr3 (47-113)||(6550323-6550389)
chr3 (27-110)||(6802864-6802949)
chr3 (40-113)||(6785671-6785744)
chr3 (204-233)||(6943474-6943503)
[»] scaffold0425 (1 HSPs)
scaffold0425 (27-113)||(12185-12271)
[»] chr2 (1 HSPs)
chr2 (27-65)||(27408805-27408843)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 6558830 - 6558914
Alignment:
Q  27 tctttaatttctgcatactgtgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||||||||||    
T  6558830 tctttaatttctgcatactgt--cactctcttttggtaatataaattgcaacacatcatctcttccctagttttaaattcaaacata 6558914  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 6527499 - 6527585
Alignment:
Q  27 tctttaatttctgcatactgtgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||  ||||| |||||||| ||||| |||||||||||    
T  6527499 tctttaatttctgcataccgtgacacgctcttttagtaatataaattgcatcatgtcatcttttccctagttttacattcaaacata 6527585  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 6849080 - 6849166
Alignment:
Q  27 tctttaatttctgcatactgtgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||  ||||| ||||| || ||||| |||||||||||    
T  6849080 tctttaatttctgcataccgtgacaccctcttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacata 6849166  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 6787259 - 6787325
Alignment:
Q  159 actctacaaaagtagtctgatccatgtggactgtgttctcttcagattggtagatgctgattctgct 225  Q
    |||| ||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6787259 actcgacaaaagtcctcttacccatgtggactgtgttctcttcagattggtagatgctgattctgct 6787325  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 6797230 - 6797292
Alignment:
Q  51 actctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  6797230 actcttttttggtaatataaattgcatcacatcaacttttccctatttttaaattcaatcata 6797292  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 6938559 - 6938502
Alignment:
Q  53 tctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacat 112  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  6938559 tctcttttggtaatataaattgcatcacatcatc--ttccctatttttagattcaaacat 6938502  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 6411128 - 6411172
Alignment:
Q  19 tttgtgaatctttaatttctgcatactgtgacactctcttttggt 63  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  6411128 tttgtgagtctttaatttctgcatactgtgacactcttttttggt 6411172  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 6550323 - 6550389
Alignment:
Q  47 tgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    ||||||||  ||||||||||| |||||||||||||| ||  |||||||| ||||| |||||||||||    
T  6550323 tgacactcatttttggtaatacaaattgcatcacattattctttccctagttttacattcaaacata 6550389  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 6802864 - 6802949
Alignment:
Q  27 tctttaatttctgcatactgtgaca--ctctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaac 110  Q
    |||||||||||||||||||||||||  || | |||||||||||||| ||| ||| ||||||  |||||||| ||||| || |||||    
T  6802864 tctttaatttctgcatactgtgacacccttttttttggtaatataatttgaatcgcatcatattttccctaattttacatccaaac 6802949  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 6785671 - 6785744
Alignment:
Q  40 catactgtgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    |||||||||||||||   ||||||  |||||||||| |||||||||| ||||||||  ||||  ||||||||||    
T  6785671 catactgtgacactcctatttggttttataaattgcttcacatcatcctttccctagctttacgttcaaacata 6785744  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 6943503 - 6943474
Alignment:
Q  204 attggtagatgctgattctgctggtgagac 233  Q
    ||||||||||||||||||||||||||||||    
T  6943503 attggtagatgctgattctgctggtgagac 6943474  T

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Target: scaffold0425 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 12185 - 12271
Alignment:
Q  27 tctttaatttctgcatactgtgacactctcttttggtaatataaattgcatcacatcatcgtttccctatttttaaattcaaacata 113  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||||||||||  ||||| ||||| || ||||| |||||||||||    
T  12185 tcttaaatttctgcataccgtgacaccctcttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacata 12271  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 27408843 - 27408805
Alignment:
Q  27 tctttaatttctgcatactgtgacactctcttttggtaa 65  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  27408843 tctttaatttctgtatactgtgacactctcatttggtaa 27408805  T

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