View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_59 (Length: 239)
Name: NF5918_high_59
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_59 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 372052 - 371832
Alignment:
| Q |
17 |
atatctagaagcactatttgttttggttgaagggtctagaatcactatttcaatannnnnnnngttgagaaaatcactgtttcaatattgaaatgtgttt |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
372052 |
atatctagaagcactatttgtttttgttgaagggtctagaatcactatttcaatattttttttgttgagaaaatcactgtttcaatattgaaatgtgttt |
371953 |
T |
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| Q |
117 |
ttccttttgtacacaagtaatattaatgtattgagtgaatagaaacatggaaatgtcaacagaatagtaaaaagacggtgtgtggcaaagatcgtgatta |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371952 |
ttccttttgtaca--agtaatattaatgtattgagtgaatagaaacatggaaatgtcaacagaatagtaaaaagacggtgtgtggcaaagatcgtgatta |
371855 |
T |
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| Q |
217 |
attatactatcgaggccattttt |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
371854 |
attatactatcgaggccattttt |
371832 |
T |
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