View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_60 (Length: 236)
Name: NF5918_high_60
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 33223701 - 33223497
Alignment:
| Q |
19 |
actataggtatcaacattaagaacttcacatggttcacgaccagatatctctttagccttcatctgataatactctttaaatgcaatatcaaacccttct |
118 |
Q |
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| T |
33223701 |
actataggtatcaacattaagaacttcacatggttcacgaccagatatctctttagccttcatctgataatactctttaaatgcaatatcaaacccttct |
33223602 |
T |
|
| Q |
119 |
ttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtgaccaagaagtttaatgctatatcctttgcttagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33223601 |
ttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtgaccaagaagtttaatgctatgtcctttgcttagaa |
33223502 |
T |
|
| Q |
219 |
taatc |
223 |
Q |
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||||| |
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| T |
33223501 |
taatc |
33223497 |
T |
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