View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_62 (Length: 228)
Name: NF5918_high_62
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_62 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 1047012 - 1047233
Alignment:
| Q |
7 |
cagacaatgccttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagt |
106 |
Q |
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| T |
1047012 |
cagacaatgccttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagt |
1047111 |
T |
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| Q |
107 |
ctttcctgattcaagtacttcaaatatgttgtcgaccgcttttgctgccatgatcaaaatcttgttatagatagatagtttgaaaaatgcagtcaaaaca |
206 |
Q |
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| T |
1047112 |
ctttcctgattcaagtacttcaaatatgttgtcgactgcttttgctgccatgatcaaaatcttgttatagatagatagtttgaaaaatgcagtcaaaaca |
1047211 |
T |
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| Q |
207 |
tgtttgtggattcttgaatctt |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
1047212 |
tgtttgtggattcttgaatctt |
1047233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 1023667 - 1023457
Alignment:
| Q |
18 |
ttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcctgatt |
117 |
Q |
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| T |
1023667 |
ttagaacttgctccaatttgcactttacaatcatttatcatagataatctaaatatttctgctgtaacagtttttcttgcttccatagtcattcctggtt |
1023568 |
T |
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| Q |
118 |
caagtacttcaaatatgttgtcgaccgcttttgctgccatgatcaaaatcttgttatagatagatagtttgaaaaatgcagtcaaaacatgtttgtggat |
217 |
Q |
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| T |
1023567 |
caagtacttcaaatatgttgtgaaatgctccagctgccatgatcaaaatcttgttatagatagatagtttgaaaatacccgtcaaaacatgttcctggat |
1023468 |
T |
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| Q |
218 |
tcttgaatctt |
228 |
Q |
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| T |
1023467 |
tctcgaatctt |
1023457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 1010590 - 1010433
Alignment:
| Q |
68 |
atatatttctgctgtaacatttgttcttgcttccatagtctttcctgattcaagtacttcaaatatgttgtcgaccgcttttgctgccatgatcaaaatc |
167 |
Q |
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| T |
1010590 |
atatatttctgctgcaacattttttcttgcttccattgtcatttctgattcaagtacttcaaatatgctgttaactgctcctgctgccatggtcaaaatc |
1010491 |
T |
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| Q |
168 |
ttgttatagatagatagtttgaaaaatgcagtcaaaacatgtttgtggattcttgaat |
225 |
Q |
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| T |
1010490 |
ttgttatagatagatagtttaaaaaatgcagtcaaaacatgttcatggattcttgaat |
1010433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 40642255 - 40642462
Alignment:
| Q |
18 |
ttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcctgatt |
117 |
Q |
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||||||||| ||||||||| |||||| |||| | |||||||| | || ||||||||||||||| ||||||| |||||| || ||||||||||||||| |
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| T |
40642255 |
ttagaacttgctccaatttacactttacaataatctatcatagagaatctatatatttctgcttcaacattttttcttgtttatctagtctttcctgatt |
40642354 |
T |
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| Q |
118 |
caagtacttcaaatatgttgtcgaccgcttttgctgccatgatcaaaatcttgttatagatagatagtttgaaaaatgcagtcaaaacatgtttgtggat |
217 |
Q |
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||||||||||||||||||| || || ||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
40642355 |
caagtacttcaaatatgttatcaactgctctttctgccatgatcaaaatattgttatagatagatagtttgaaatatgcagtcaaaacatgttcctggat |
40642454 |
T |
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| Q |
218 |
tcttgaat |
225 |
Q |
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|||||||| |
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| T |
40642455 |
tcttgaat |
40642462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 35821365 - 35821145
Alignment:
| Q |
14 |
tgccttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcct |
113 |
Q |
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|||| |||||||| |||||||||||||||| |||||| | |||||| |||| ||||||||| |||||| ||||| |||||||||||| || ||||| |
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| T |
35821365 |
tgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccg |
35821266 |
T |
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| Q |
114 |
gattcaagtacttcaaatatgttgtcgaccgcttttgctgccatgatcaaaatcttgtta------tagatagatagtttgaaaaatgcagtcaaaacat |
207 |
Q |
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|||| |||||||| | ||||||||| | |||| || |||||||| |||||||||||| ||||| ||||| ||||| |||||||||| ||||| |
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| T |
35821265 |
aattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacat |
35821166 |
T |
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| Q |
208 |
gtttgtggattcttgaatctt |
228 |
Q |
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| | || ||||||||||||| |
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| T |
35821165 |
gctcttgaattcttgaatctt |
35821145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 8312474 - 8312552
Alignment:
| Q |
150 |
gctgccatgatcaaaatcttgttatagatagatagtttgaaaaatgcagtcaaaacatgtttgtggattcttgaatctt |
228 |
Q |
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| T |
8312474 |
gctgccatgatcaaaatctagttatagatagatagtttgaaaatacccgtcaaaacatgttcctggattctcgaatctt |
8312552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 28439428 - 28439336
Alignment:
| Q |
18 |
ttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcc |
112 |
Q |
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|||||||| |||||||||||||||| |||||| ||||| || ||| ||| ||||||||||||| |||| || | ||||||| ||||||||||| |
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| T |
28439428 |
ttagaactggctccaatttgcactttacaatcagctatcgtagataggct-tatatttctgctgcaacactt-tctttgcttctatagtctttcc |
28439336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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