View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_66 (Length: 215)
Name: NF5918_high_66
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 54004262 - 54004097
Alignment:
| Q |
34 |
atgaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctataaaagagaggcactggtttaatgagtatctcaaatctcaaggatatatg |
133 |
Q |
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| T |
54004262 |
atgaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctataaaagagaggcactggtttaatgagtatctcaaatctcaaggatatatg |
54004163 |
T |
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| Q |
134 |
tatgatcctgttattgagcttccactttcacctcaaggtagttatacttgtgatcaattttccatt |
199 |
Q |
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| T |
54004162 |
tatgatcctgttattgagcttccactttcacctcaaggtagttatacttgttatcaattttccatt |
54004097 |
T |
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