View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_high_7 (Length: 655)
Name: NF5918_high_7
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 233 - 647
Target Start/End: Original strand, 52511922 - 52512336
Alignment:
| Q |
233 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
332 |
Q |
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| T |
52511922 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
52512021 |
T |
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| Q |
333 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttcatatccaaggatgtggta |
432 |
Q |
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| T |
52512022 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttcatatccaaggatgtggta |
52512121 |
T |
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| Q |
433 |
gaagacgaagacgagtaatgattcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttg |
532 |
Q |
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| T |
52512122 |
gcagacgaagacgagtaatggttcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttg |
52512221 |
T |
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| Q |
533 |
tgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatatt |
632 |
Q |
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| T |
52512222 |
tgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatatt |
52512321 |
T |
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| Q |
633 |
attattcttcatctc |
647 |
Q |
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| T |
52512322 |
attattcttcatctc |
52512336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 52511698 - 52511861
Alignment:
| Q |
17 |
tcaacttcaatataattagtagtattttcttatattttgaagatcattcttaatagtatcttatatagttttgtacaataaggtagtgt-nnnnnnnnnt |
115 |
Q |
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| T |
52511698 |
tcaacttcattataattagtagtattttcttatattttgaagatcattcttaatagtatcttatatagttttgtacaataaggtagtgtaaaaaaaatat |
52511797 |
T |
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| Q |
116 |
tgaaggtggtat-nnnnnnntgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
178 |
Q |
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| T |
52511798 |
tgaaggtggtataaaaaaactgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
52511861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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