View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_low_10 (Length: 613)

Name: NF5918_low_10
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_low_10
NF5918_low_10
[»] chr8 (1 HSPs)
chr8 (13-596)||(10401109-10401692)
[»] chr6 (24 HSPs)
chr6 (13-335)||(20233299-20233622)
chr6 (13-335)||(22127283-22127606)
chr6 (451-592)||(20233734-20233875)
chr6 (451-592)||(22127718-22127859)
chr6 (168-283)||(18995485-18995600)
chr6 (168-285)||(22207063-22207180)
chr6 (180-304)||(21967976-21968100)
chr6 (180-304)||(22085859-22085983)
chr6 (168-283)||(20235821-20235936)
chr6 (168-283)||(22129805-22129920)
chr6 (180-304)||(22001800-22001924)
chr6 (168-283)||(18979421-18979536)
chr6 (168-283)||(20083717-20083832)
chr6 (460-581)||(20235407-20235528)
chr6 (460-581)||(22129391-22129512)
chr6 (460-579)||(18995084-18995203)
chr6 (460-579)||(22001501-22001620)
chr6 (460-579)||(22085560-22085679)
chr6 (182-283)||(18990773-18990874)
chr6 (460-579)||(21967231-21967350)
chr6 (460-579)||(21967677-21967796)
chr6 (198-283)||(24387200-24387285)
chr6 (493-581)||(20083436-20083524)
chr6 (460-579)||(22209622-22209741)
[»] scaffold0007 (2 HSPs)
scaffold0007 (168-283)||(7393-7508)
scaffold0007 (460-579)||(7790-7909)
[»] scaffold0074 (2 HSPs)
scaffold0074 (168-283)||(49859-49974)
scaffold0074 (460-579)||(50256-50375)
[»] scaffold0264 (1 HSPs)
scaffold0264 (460-579)||(14919-15038)
[»] chr1 (6 HSPs)
chr1 (180-283)||(47627666-47627769)
chr1 (174-283)||(47574877-47574986)
chr1 (192-277)||(47593652-47593737)
chr1 (180-279)||(47584568-47584667)
chr1 (180-256)||(47619494-47619570)
chr1 (195-247)||(47700942-47700994)
[»] chr5 (2 HSPs)
chr5 (180-250)||(469773-469843)
chr5 (547-579)||(469460-469492)
[»] chr2 (2 HSPs)
chr2 (183-250)||(2672718-2672785)
chr2 (190-250)||(31229614-31229674)
[»] chr7 (2 HSPs)
chr7 (180-250)||(19939307-19939377)
chr7 (180-250)||(19970446-19970516)


Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 596
Target Start/End: Complemental strand, 10401692 - 10401109
Alignment:
Q  13 aatatcagattttggtcttgctagaattgttgaattaaaccaagacaaaggaaacacaaataggatcgtcggaacattgtaagtgttaaattatcatcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401692 aatatcagattttggtcttgctagaattgttgaattaaaccaagacaaaggaaacacaaataggatcgtcggaacattgtaagtgttaaattatcatcaa 10401593  T
Q  113 tatcccatgttttcctttcataaaagatagtctcgtgttgacnnnnnnnnnaaaattattttgtagaggttatatatctccagaatatgcaatgcttgga 212  Q
    |||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401592 tatcccatcttttcctttcataaaagatagtctcgtgttgacttttttttaaaaattattttgtagaggttatatatctccagaatatgcaatgcttgga 10401493  T
Q  213 caattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaacataaggtcttatgaatcacatgttggtg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401492 caattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaacataaggtcttatgaatcacatgttggtg 10401393  T
Q  313 atagcctcctaagtaatgtaagtgtgtgtatatatccaatgtttatttcttccattaatgtagataagaaatatacatccaatgtttacttagattgatt 412  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401392 atagcctcctaagtaatgtaagtgtgtgtatatatacaatgtttatttcttccattaatgtagataagaaatatacatccaatgtttacttagattgatt 10401293  T
Q  413 caaatgcaatgtggtaacaaattgtatattcatacatccaattgtcacaggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaa 512  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10401292 caaatgcaatgtggtaacaaattgtatattcattcatccaattgtcacaggtttggagacaatggagtgatcaaataacattaagtatattggaccaaaa 10401193  T
Q  513 tattaaaggaacttattctgaatatgaggtcatcaaatgcattcagattggtttattatgtgttcaacagttccctgatgatag 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401192 tattaaaggaacttattctgaatatgaggtcatcaaatgcattcagattggtttattatgtgttcaacagttccctgatgatag 10401109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 20233299 - 20233622
Alignment:
Q  13 aatatcagattttggtcttgctagaattgttgaattaaaccaagacaaaggaaacacaaataggatcgtcggaacattgtaagtgttaaattatcatcaa 112  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  20233299 aatatcagattttggtcttgctagaattgtagaactaaaccaggacaaaggaagtacaaataggatcgtgggaacattgtaagttttaaattatcatcaa 20233398  T
Q  113 tatcccatgttttcctttcataaaagatagtctcgtgttgacnnnnnnnnnaaaattatt-ttgtagaggttatatatctccagaatatgcaatgcttgg 211  Q
    | |||  ||  |||||||| |||||  ||  ||||||||||          ||   |||| || |||||||||||| |||||||||||||| ||||| ||    
T  20233399 tttccgctggattcctttcttaaaatctaagctcgtgttgatttgtttcaaaattgtattgttttagaggttatatgtctccagaatatgcgatgctcgg 20233498  T
Q  212 acaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaacataaggtcttatgaatcacatgttggt 311  Q
     |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  20233499 gcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaatattaggtcttatgaatcacatgttggt 20233598  T
Q  312 gatagcctcctaagtaatgtaagt 335  Q
    ||| ||||||| ||| ||||||||    
T  20233599 gatggcctcctgagttatgtaagt 20233622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 22127283 - 22127606
Alignment:
Q  13 aatatcagattttggtcttgctagaattgttgaattaaaccaagacaaaggaaacacaaataggatcgtcggaacattgtaagtgttaaattatcatcaa 112  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  22127283 aatatcagattttggtcttgctagaattgtagaactaaaccaggacaaaggaagtacaaataggatcgtgggaacattgtaagttttaaattatcatcaa 22127382  T
Q  113 tatcccatgttttcctttcataaaagatagtctcgtgttgacnnnnnnnnnaaaattatt-ttgtagaggttatatatctccagaatatgcaatgcttgg 211  Q
    | |||  ||  |||||||| |||||  ||  ||||||||||          ||   |||| || |||||||||||| |||||||||||||| ||||| ||    
T  22127383 tttccgctggattcctttcttaaaatctaagctcgtgttgatttgtttcaaaattgtattgttttagaggttatatgtctccagaatatgcgatgctcgg 22127482  T
Q  212 acaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaacataaggtcttatgaatcacatgttggt 311  Q
     |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  22127483 gcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaatattaggtcttatgaatcacatgttggt 22127582  T
Q  312 gatagcctcctaagtaatgtaagt 335  Q
    ||| ||||||| ||| ||||||||    
T  22127583 gatggcctcctgagttatgtaagt 22127606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 451 - 592
Target Start/End: Original strand, 20233734 - 20233875
Alignment:
Q  451 caattgtcacaggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaat 550  Q
    ||||||| ||||||||||| ||||||||| ||| ||||| ||||||| ||||| |||  ||||||||||||||  |||||||||  ||| || || ||||    
T  20233734 caattgtaacaggtttggaaacaatggagggatgaaataccattaagcatattagacccaaatattaaaggaagatattctgaaattgaagtaattaaat 20233833  T
Q  551 gcattcagattggtttattatgtgttcaacagttccctgatg 592  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  20233834 gcattcagattggtttattatgcgttcagcagttcccagatg 20233875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 451 - 592
Target Start/End: Original strand, 22127718 - 22127859
Alignment:
Q  451 caattgtcacaggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaat 550  Q
    ||||||| ||||||||||| ||||||||| ||| ||||| ||||||| ||||| |||  ||||||||||||||  |||||||||  ||| || || ||||    
T  22127718 caattgtaacaggtttggaaacaatggagggatgaaataccattaagcatattagacccaaatattaaaggaagatattctgaaattgaagtaattaaat 22127817  T
Q  551 gcattcagattggtttattatgtgttcaacagttccctgatg 592  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  22127818 gcattcagattggtttattatgcgttcagcagttcccagatg 22127859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 18995600 - 18995485
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  18995600 ttattttgtagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 18995501  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  18995500 ttgctggaaagaagaa 18995485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 22207063 - 22207180
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  22207063 ttattttgcagtggttatatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 22207162  T
Q  268 ttactggaaagaagaaca 285  Q
    ||  ||||||||||||||    
T  22207163 ttgttggaaagaagaaca 22207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 304
Target Start/End: Complemental strand, 21968100 - 21967976
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 279  Q
    |||||||| |||||||||||||||||| || |||||||||| || ||||| ||||||||||||||||||||||||||  | || ||| |  |||||||||    
T  21968100 ggttatatgtctccagaatatgcaatgttttgacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaaga 21968001  T
Q  280 agaacataaggtcttatgaatcaca 304  Q
    |||| ||||| || |||||| ||||    
T  21968000 agaatataagttcatatgaaccaca 21967976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 304
Target Start/End: Complemental strand, 22085983 - 22085859
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 279  Q
    |||||||| || ||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||  | || ||| |  |||||||||    
T  22085983 ggttatatgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaaga 22085884  T
Q  280 agaacataaggtcttatgaatcaca 304  Q
    |||| ||||| || |||||| ||||    
T  22085883 agaatataagttcatatgaaccaca 22085859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 20235936 - 20235821
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||||||||| |||||||| ||||| |||||||||||| | ||||||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  20235936 ttattttgtagtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 20235837  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  20235836 ttgctggaaagaagaa 20235821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 22129920 - 22129805
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||||||||| |||||||| ||||| |||||||||||| | ||||||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  22129920 ttattttgtagtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 22129821  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  22129820 ttgctggaaagaagaa 22129805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 180 - 304
Target Start/End: Complemental strand, 22001924 - 22001800
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 279  Q
    |||||||| |||||||||||||||||| || |||||||||| || ||||| ||| ||||||||||||||||||||||  | || ||| |  |||||||||    
T  22001924 ggttatatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagttttggagtcatgatcatagagattgtagctggaaaga 22001825  T
Q  280 agaacataaggtcttatgaatcaca 304  Q
    ||||  |||| || |||||||||||    
T  22001824 agaatgtaagttcatatgaatcaca 22001800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 18979536 - 18979421
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||| ||||| |||||||| ||||| ||||||| |||| ||||||||||||| || ||||| ||  | |||||||||||||| ||| || | || ||||    
T  18979536 ttattatgtagtggttatatgtctccggaatatgtaatgtttggacaattttctgaaaaatccgacatatatagttttggagttatgcttgtagagatta 18979437  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  18979436 ttgctggaaagaagaa 18979421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 20083832 - 20083717
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||| ||||| |||||||| ||||| ||||||| |||| | ||||||||||| || ||||| ||  |||||||||||||||| ||| || | || ||||    
T  20083832 ttattatgtagtggttatatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagttttggagttatgcttatagagatta 20083733  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  20083732 ttgctggaaagaagaa 20083717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 20235528 - 20235407
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||||||||  ||||||| | | |||||||| ||||||  ||||||| ||| |  |||||||  | |||| ||||| || ||||||||||    
T  20235528 caggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatattcaagaagattattctacaaatgaagtcattaagtgcattcaga 20235429  T
Q  560 ttggtttattatgtgttcaaca 581  Q
    ||||| ||||||||||||||||    
T  20235428 ttggtctattatgtgttcaaca 20235407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 22129512 - 22129391
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||||||||  ||||||| | | |||||||| ||||||  ||||||| ||| |  |||||||  | |||| ||||| || ||||||||||    
T  22129512 caggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatattcaagaagattattctacaaatgaagtcattaagtgcattcaga 22129413  T
Q  560 ttggtttattatgtgttcaaca 581  Q
    ||||| ||||||||||||||||    
T  22129412 ttggtctattatgtgttcaaca 22129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 18995203 - 18995084
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||||||| | |  ||||||| ||||||  ||||||||||| |  |||||||| | |||| ||||| |||||||||||||    
T  18995203 caggtatggagacagtggatggatcaaacacctataagtattttggacctaaatattaaagaagattattctgcaaatgaagtcattaaatgcattcaga 18995104  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| | ||||||||||||    
T  18995103 ttggtctgttatgtgttcaa 18995084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 22001620 - 22001501
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||| ||| | | |||| ||||||||||  |||||||||||||  ||||||| ||  ||| ||||| || ||||||||||    
T  22001620 caggtatggagacagtggatggataaaacacctttaaatatattggacccaaatattaaaggagattattctaaaactgaagtcattaagtgcattcaga 22001521  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  22001520 ttggtctattatgtgttcaa 22001501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 22085679 - 22085560
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||| ||| | | |||| ||||||||||  |||||||||||||  ||||||| ||  ||| ||||| || ||||||||||    
T  22085679 caggtatggagacagtggatggataaaacacctttaaatatattggacccaaatattaaaggagattattctaaaactgaagtcattaagtgcattcaga 22085580  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  22085579 ttggtctattatgtgttcaa 22085560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 18990874 - 18990773
Alignment:
Q  182 ttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaag 281  Q
    |||||| ||||| ||||||| |||| ||||||||||||| || || || ||  |||||||||||||||| ||| |||| || |||||| ||| |||||||    
T  18990874 ttatatgtctccggaatatgtaatgtttggacaattttctgaaaattccgacatttatagttttggagttatgcttttagagattattgctgaaaagaag 18990775  T
Q  282 aa 283  Q
    ||    
T  18990774 aa 18990773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 21967350 - 21967231
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||| ||| | | |||| ||||||||||  |||||||||||||  || |||| ||  ||| ||||| || ||||||||||    
T  21967350 caggtgtggagacagtggatggataaaacacctttaaatatattggacccaaatattaaaggagatttttctaaaactgaagtcattaagtgcattcaga 21967251  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  21967250 ttggtctattatgtgttcaa 21967231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 21967796 - 21967677
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||| ||| | | |||| ||||||||||  |||||||||||||  || |||| ||  ||| ||||| || ||||||||||    
T  21967796 caggtgtggagacagtggatggataaaacacctttaaatatattggacccaaatattaaaggagatttttctaaaactgaagtcattaagtgcattcaga 21967697  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  21967696 ttggtctattatgtgttcaa 21967677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 24387200 - 24387285
Alignment:
Q  198 tatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaa 283  Q
    |||| |||| ||||||||||||| || ||||| ||  ||||||||||||||||  || |||| || |||||| |||||||||||||    
T  24387200 tatgtaatgtttggacaattttctgaaaaatccgacatttatagttttggagttctgcttttcgagattattgctggaaagaagaa 24387285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 581
Target Start/End: Complemental strand, 20083524 - 20083436
Alignment:
Q  493 ttaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcagattggtttattatgtgttcaaca 581  Q
    ||||||||| ||||   ||||||||||| |  |||||||  | |||| ||||| || ||||||||||||||| ||||||||||||||||    
T  20083524 ttaagtatactggatccaaatattaaagaagattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaaca 20083436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 22209622 - 22209741
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||||||||  ||||||| | | |||||||| ||||||  ||||||| ||| |  |||||||  | |||| || || || | ||||||||    
T  22209622 caggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatattcaagaagattattctacaaatgaagtaattaagtacattcaga 22209721  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  22209722 ttggtctattatgtgttcaa 22209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 168 - 283
Target Start/End: Original strand, 7393 - 7508
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||  |||||||||||||||| ||| |||| || ||||    
T  7393 ttattttgtagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagatta 7492  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  7493 ttgctggaaagaagaa 7508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 7790 - 7909
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||||||| | | |||||||||||||||  ||||||||||  |  |||||||  | |||| ||||| |||||||||||||    
T  7790 caggtatggagacagtggatggatcaaacacctttaagtatattggacccaaatattaaaaaagattattctacaaatgaagtcattaaatgcattcaga 7889  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| | ||||||||||||    
T  7890 ttggtctgttatgtgttcaa 7909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 168 - 283
Target Start/End: Original strand, 49859 - 49974
Alignment:
Q  168 ttattttgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaatta 267  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||  |||||||||||||||| ||| |||| || ||||    
T  49859 ttattttgtagtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagatta 49958  T
Q  268 ttactggaaagaagaa 283  Q
    || |||||||||||||    
T  49959 ttgctggaaagaagaa 49974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 50256 - 50375
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||| ||||  ||||||| | |  ||||||| ||||||  ||||||||||| |  |||||||  | |||| ||||| |||||||||||||    
T  50256 caggtatggagacagtggatggatcaaacacctataagtattttggacccaaatattaaagaagattattctacaaatgaagtcattaaatgcattcaga 50355  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| | ||||||||||||    
T  50356 ttggtctgttatgtgttcaa 50375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 460 - 579
Target Start/End: Complemental strand, 15038 - 14919
Alignment:
Q  460 caggtttggagacaatggagtgatcaaataacattaagtatattggacaaaaatattaaaggaacttattctgaatatgaggtcatcaaatgcattcaga 559  Q
    ||||| |||||||||||||  ||||||| | | |||||||||||||||  ||||||||||| |  |||||||  | |||| ||||| || ||||||||||    
T  15038 caggtatggagacaatggatggatcaaacacctttaagtatattggacccaaatattaaagaagattattctacaaatgaagtcattaagtgcattcaga 14939  T
Q  560 ttggtttattatgtgttcaa 579  Q
    ||||| ||||||||||||||    
T  14938 ttggtctattatgtgttcaa 14919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 47627666 - 47627769
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 279  Q
    ||||| || ||||| ||||||||||||| |||||||||||| ||||| |||||||||| |||||||||||| ||| || | || ||||||| |||||| |    
T  47627666 ggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaa 47627765  T
Q  280 agaa 283  Q
    ||||    
T  47627766 agaa 47627769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 47574877 - 47574986
Alignment:
Q  174 tgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactg 273  Q
    ||||| || |||||||||||| |||||||||||| |||| | ||||| | ||| |||||||| |||||||| ||| ||||| || | |||||||||| ||    
T  47574877 tgtagtggatatatatctccataatatgcaatgcatggatatttttctgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtg 47574976  T
Q  274 gaaagaagaa 283  Q
    ||||||||||    
T  47574977 gaaagaagaa 47574986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 47593652 - 47593737
Alignment:
Q  192 ccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaa 277  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||||| |||||  |||| || ||||||||||||||    
T  47593652 ccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaa 47593737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 47584568 - 47584667
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 279  Q
    ||||||||||||||||||||||| |||| |||| | ||||| | |||||| ||||| |||||||||||| ||||| || | || ||||||| ||||||||    
T  47584568 ggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaaga 47584667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 47619494 - 47619570
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgat 256  Q
    |||||||| ||||| |||||||||||||||||| |||| || || ||||| || |||| |||||||||||| |||||    
T  47619494 ggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagtaatgat 47619570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 47700994 - 47700942
Alignment:
Q  195 gaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttgg 247  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||| |||||||||    
T  47700994 gaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttgg 47700942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 469843 - 469773
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagt 250  Q
    |||||||| ||||| |||||||||||||  ||||||||||| |||||||| ||||| |  |||||||||||    
T  469843 ggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagt 469773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 469492 - 469460
Alignment:
Q  547 aaatgcattcagattggtttattatgtgttcaa 579  Q
    |||||||||||| ||||||||||||||||||||    
T  469492 aaatgcattcagcttggtttattatgtgttcaa 469460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 2672718 - 2672785
Alignment:
Q  183 tatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagt 250  Q
    ||||| ||||||||||||||||||  |||| | ||||| | ||||||||||||||  |||||||||||    
T  2672718 tatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgttttcagttttggagt 2672785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 31229674 - 31229614
Alignment:
Q  190 ctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagt 250  Q
    ||||||||||||||||||  ||| | ||  |||||||| | ||||||||||||||||||||    
T  31229674 ctccagaatatgcaatgcacggatatttgacggagaaagcggatgtttatagttttggagt 31229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 19939307 - 19939377
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagt 250  Q
    |||||||| |||||||||||||||||||  ||||  ||||| || ||||||||||| | ||| ||||||||    
T  19939307 ggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 19970446 - 19970516
Alignment:
Q  180 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagt 250  Q
    |||||||| |||||||||||||||||||  ||||  ||||| || ||||||||||| | ||| ||||||||    
T  19970446 ggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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