View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_16 (Length: 488)
Name: NF5918_low_16
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 3561364 - 3560927
Alignment:
| Q |
1 |
gcttttatttgtttttggtaaaagaattgtagtatcattaataccttttttgctccttagtttatttagatgctgttatgatagagcttaacattttgtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| ||| ||||| |||| | |||||||||||||||||||| |
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| T |
3561364 |
gcttttatttgtttttggtaaaagaattgtagtatcatttataacttttt-gcaccttagttaattcagatgttgttgtaatagagcttaacattttgtg |
3561266 |
T |
|
| Q |
101 |
gacttgatgtttttgatatattagtcttt-aagtttatgtaattgtaaaa-tttatgttcatattgctttataagcttacgtgaaactaaaaggctacta |
198 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3561265 |
gacttgatgtttttgaaatattagtcttttaagtttatgtaattgtaaaactttatgttcatattactttataagcttacgtgaaactaaaaggctacta |
3561166 |
T |
|
| Q |
199 |
tgtgtagggattttcattgattgtgttgctacactgatgaagatctctctctgtctagcattatgttcattacaaatacacgaaaggttgttatttgagt |
298 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3561165 |
tatgtagggattttcattgattatgttgctacactgatgaagatctctctctgtctagcattatgttcattacaaatacacgaaaggttgttatttgaga |
3561066 |
T |
|
| Q |
299 |
aaaactatcaagaatttc-----------aatgatatcgcattagacattcaaacgctatcaagaacagttggaatgactattattcgtgttcattcaac |
387 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3561065 |
aaaactatcaagaatttcaatggaatttcaatgatatcacattagacattcaaacgctatcaagaacagttggaatgactattattcgtgttcattcaac |
3560966 |
T |
|
| Q |
388 |
a-nnnnnnnnnaatatttgagtttagtctgtaactaaat |
425 |
Q |
| |
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| |||||||||||||||||||||||||||| |
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| T |
3560965 |
attttttttttaatatttgagtttagtctgtaactaaat |
3560927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 3584938 - 3584465
Alignment:
| Q |
1 |
gcttttatttgtttttggtaaaagaattgtagtatcattaataccttttttgctccttagtttatttagatgctgttatgatagagcttaacattttgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| ||| ||||| |||| | |||||||||||||||||||| |
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|
| T |
3584938 |
gcttttatttgtttttggtaaaagaattgtagtatcatttataacttttt-gcaccttagttaattcagatgttgttgtaatagagcttaacattttgtg |
3584840 |
T |
|
| Q |
101 |
gacttgatgtttttgatatattagtctttaagtttatgtaattgtaaaa-tttatgttcatattgctttataagcttacgtgaaactaaaaggctactat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||| |||||||||||| |
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|
| T |
3584839 |
gacttgatgtttttgatatattagtctttaagtttatgtaattgtaaaactttatgttcatattattttataagtttatgtgaaactgaaaggctactat |
3584740 |
T |
|
| Q |
200 |
gtgtagggattttcattgattgtgttgctacactgatgaagatctctctctgtctagcattatgttcattacaaatacacgaaaggttgttatttgagta |
299 |
Q |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || | |
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| T |
3584739 |
gtgtagggattttcattgattgtgttgctacgccgatgatgatctctctctatctagcattatgttcattacaaatacacgaaaggttgttgtttcagaa |
3584640 |
T |
|
| Q |
300 |
aaactatcaagaatttc-----------aatgatatcgcattagacattcaaacgctatcaagaacagttggaatgactattattcgtgttcattcaaca |
388 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3584639 |
aaactatcaagaatttcaatggaaattcaatgatatcgcattagacattcaaacactatcaagaacagttggaatgactattattcatgttcattcaaca |
3584540 |
T |
|
| Q |
389 |
nnnnnnnnnaatatttgagtttagtctgtaactaaatatagtttgctatgtaacatagcatatttatgtaatacac |
464 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
3584539 |
-ttttttttaatatttgagtttggtctgtaactaaatatagtttggtccgtaacatagcatatttatgtaatacac |
3584465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 3554924 - 3554850
Alignment:
| Q |
398 |
aatatttgagtttagtctgtaactaaatatagtttgctatgtaacatagcatatttatgtaatacacgagtttga |
472 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
3554924 |
aatatttgagtttgctctgtaactaaatatagtttggtatgtaacatagcatatttatgtaatacacgactttga |
3554850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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