View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_low_17 (Length: 475)
Name: NF5918_low_17
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 42835164 - 42834694
Alignment:
| Q |
1 |
tgtccaattccctgttcgcatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatg |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835164 |
tgtccaattccctgttcgtatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatg |
42835065 |
T |
|
| Q |
101 |
catctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835064 |
catctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtatt |
42834965 |
T |
|
| Q |
201 |
ttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgcacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42834964 |
ttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttccgagttcaatttttgcacat |
42834865 |
T |
|
| Q |
301 |
cttgcttatggttagtttcattatcctcatacactgtaaccaaatctcctagcatttgattcttctttctctctgaaaccagctccaattctgatttagc |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42834864 |
cttgcttatgtttagtttcattatcctcatacactgtaaccaaatctcctagcatttgactcttctttctctctgaaaccagctccaattctgatttagc |
42834765 |
T |
|
| Q |
401 |
catattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
471 |
Q |
| |
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| T |
42834764 |
catattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
42834694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 50 - 310
Target Start/End: Complemental strand, 42843969 - 42843706
Alignment:
| Q |
50 |
ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgca--tct-cttgtttcaagttttcagcttcatatttacgtaatttgttt |
146 |
Q |
| |
|
||||||||||||| | | ||||||||||| | |||||| ||||||||||||| ||| |||||||||| |||||||||||||| | | |||||||||| |
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|
| T |
42843969 |
ttccctcaaagaattaacttcatcttgcaaagtcatttgctgagtagcatgcaattcttcttgtttcaatttttcagcttcatactgtcttaatttgttt |
42843870 |
T |
|
| Q |
147 |
tctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttct |
246 |
Q |
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|| |||||||||||| |||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||| ||||| | ||||||| | | |||||| |
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| T |
42843869 |
tccaattccttgtttctagactcacaatcctccaatttagaggtcaattgtattttcatgtttgacaaacttgtaatattagaattcagcttacctttct |
42843770 |
T |
|
| Q |
247 |
ccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgcacatcttgcttatg |
310 |
Q |
| |
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| |||||||||||| ||| ||| | |||||| ||| ||||||||||||| |||| |||||| |
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|
| T |
42843769 |
cagaagagaacttagtctgccaattatgcattttagacatcaatttttgcacctctttcttatg |
42843706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 462
Target Start/End: Complemental strand, 42819650 - 42819561
Alignment:
| Q |
373 |
ctgaaaccagctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactcc |
462 |
Q |
| |
|
||||||| | |||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||||||||| |
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| T |
42819650 |
ctgaaactaactccaattttgatatagccatattttcctgtgccactttaagctgaccttccaattgataagtctcagatgacttactcc |
42819561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 42819734 - 42819689
Alignment:
| Q |
277 |
tttcagagttcaatttttgcacatcttgcttatggttagtttcatt |
322 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42819734 |
tttccgagttcaatttttgcacatcttggttatggttagtttcatt |
42819689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 42843654 - 42843576
Alignment:
| Q |
383 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactc |
461 |
Q |
| |
|
|||||||||| ||||||| ||||| | |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
42843654 |
ctccaattctaatttagcaatattgttttgtgctgcttcaagctgactttgcaattgacgagtatcatgtgacttactc |
42843576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 7363583 - 7363898
Alignment:
| Q |
4 |
ccaattccctgttcgcatcttctatatc--atgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgagtagca |
98 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||| | | |||||||||| || |||||||||||||||| |
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| T |
7363583 |
ccaatttcctattcacatcttctatatagtatgcattctttgaccaagttcttccctcaaagaattaacctcatcttgcaaaatcatttgttgagtagca |
7363682 |
T |
|
| Q |
99 |
tgca--tct-cttg-tttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaat |
194 |
Q |
| |
|
|||| ||| |||| |||||| |||||||||||||||| | |||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||| |
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| T |
7363683 |
tgcaattcttcttgatttcaatttttcagcttcatattgtcctaatttgttttccaattccttgtttctagactcacaatcctccaatttagaggtcaat |
7363782 |
T |
|
| Q |
195 |
tgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaattttt |
294 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||||| || ||||||| |||||||||||| ||| ||| | |||||||||| ||||||||| |
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| T |
7363783 |
tgtattttcatgtttgacaaacatgcaatattaaaattcaactcccctttctcagaagagaacttagtctgccaattatgcatttcagacatcaattttt |
7363882 |
T |
|
| Q |
295 |
gcacatcttgcttatg |
310 |
Q |
| |
|
|||| |||| |||||| |
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|
| T |
7363883 |
gcacctctttcttatg |
7363898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 7363950 - 7364018
Alignment:
| Q |
383 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatg |
451 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |||||||||||| ||||||| ||||||| ||||| |
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|
| T |
7363950 |
ctccaattctaatttagcaatattttttagtgccgctttaagctgactttgcaatagatgagtatcatg |
7364018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 12628516 - 12628325
Alignment:
| Q |
22 |
cttctatatcatgtattctttgaccaag---ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctctt---gtttcaa |
115 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||||| ||||||||||||| |||| || ||||||||||||||||| || ||||| |||||| |
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| T |
12628516 |
cttctacatcatgttttctctgaccaaggtcttccctcaatgaactgatttcattgtgcaaaatcatttgttgagtagcattcaactcttcttgtttcat |
12628417 |
T |
|
| Q |
116 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcattt |
207 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||| ||| || | ||||||| |||||||||||||||||| |
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|
| T |
12628416 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcataatcatccaatttagagatcaattgtattttcattt |
12628325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 12622590 - 12622306
Alignment:
| Q |
22 |
cttctatatcatgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttg---tttcaa |
115 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| ||||||| ||| |||| ||||| || | |||||||||||||||||| || ||||| ||||| |
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|
| T |
12622590 |
cttctatctcatgctttctctgaccaagttcttccctcaaataacagattgtatcttccaaagccatttgttgagtagcattcaactcttcatttttcat |
12622491 |
T |
|
| Q |
116 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaa |
215 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||| ||||||||| ||| | |
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|
| T |
12622490 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcacagtcctccagtttagaggtcaattgttttttcatttcagac-at |
12622392 |
T |
|
| Q |
216 |
cttgcaatatca----aaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgca |
297 |
Q |
| |
|
||||||| || || || |||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||||| |
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|
| T |
12622391 |
cttgcaagtccatttgttctttagctcatctttctccaaagagaacttagcctccaaatcaaacatgtgagagttcaatttttgca |
12622306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 298
Target Start/End: Original strand, 30924113 - 30924357
Alignment:
| Q |
57 |
aaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttgtttc---aagttttcagcttcatatttacgtaatttgttttctaatt |
153 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||| ||||||| || ||||| |||| || |||||||||||| || | ||| |||||| ||||| |
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|
| T |
30924113 |
aaagaactaatttcgccttgcataaccattttttgtgtagcatacaactcttctttctccaaattttcagcttcacatcgccttaacttgtttgctaatg |
30924212 |
T |
|
| Q |
154 |
ccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaaga |
253 |
Q |
| |
|
| | || ||||||| || | ||| ||| | |||||||| ||| |||| |||| |||||| |||||||||||| ||| || || ||||||||| ||||| |
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|
| T |
30924213 |
aatggcttctagactcccattcctccagtgttgaggtcaactgtgtttttatttctgacaagcttgcaatatcagaatgcaattgatctttctcaaaaga |
30924312 |
T |
|
| Q |
254 |
gaacttagcttgcaaatcaagcatttcagagttcaatttttgcac |
298 |
Q |
| |
|
|||| || |||| |||| |||||||| |||| ||||||||| |
|
|
| T |
30924313 |
aaactgtgcctgcacatcatgcatttcatccttcagtttttgcac |
30924357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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