View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_low_25 (Length: 442)
Name: NF5918_low_25
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 32847559 - 32847962
Alignment:
| Q |
18 |
accctgtgcgtcacctagttaattagtaaataatctctactaacaatgaaatcaaatttttgcatctctttcttaaatcttactattcattgccccgccc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32847559 |
accctgtgcgtcacctagttaattagtaaataatctctactaacaatgaaatcaaatttttgcatatctttcttaaatcttactattcattgccccgccc |
32847658 |
T |
|
| Q |
118 |
cagatcagaaacaacaaaagcaagttgaataaagtattgtaagaattcatagttgaatcagaaaccctaactaatcaacagttcattgaaaaatattgca |
217 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32847659 |
cagatcagaaaccacaaaagcaaattgaataaagtattgtaagaattcatagttgaatcagaaaccctaactaatcaacagttcattgaaaaatattgca |
32847758 |
T |
|
| Q |
218 |
gtgaagaatatacctgatgccacgacggtggtggttctgaatgtctccagtaagttgttcttgatctacagttctataccgtgctgattttcacaatgag |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32847759 |
gtgaagaatatacctgatgccgcgacggtggtggttctgacggtctccagtaagtttttcttgatctacagttctataccgtgctgattttcacaatgag |
32847858 |
T |
|
| Q |
318 |
tttgagtgatttctgttttcatttctaaaatatatctatctaatatttgcaggtattgtctatgtgttcattcagattttcatcatgagttatactacta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32847859 |
tttgagtgatttctgttttcatttctaaaatatatctatctaatatttgcaggtattgtctatgtgttcattcagattttcatcatgagttatactacta |
32847958 |
T |
|
| Q |
418 |
ttat |
421 |
Q |
| |
|
|||| |
|
|
| T |
32847959 |
ttat |
32847962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 32856607 - 32856695
Alignment:
| Q |
277 |
cttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgtttt-catttctaaaatatatctatctaatatt |
364 |
Q |
| |
|
||||||||||| || || || ||||||||||||| |||| | ||| ||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
32856607 |
cttgatctacacttatacactgtgctgattttcatgatgaatatgactgatttctgttttccatttcgaatgtatatctatctaatatt |
32856695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University