View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_low_27 (Length: 424)
Name: NF5918_low_27
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 29701050 - 29701441
Alignment:
| Q |
17 |
ttgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaatttagtatcccttcttatttgtttctaacatcaaatgttggttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29701050 |
ttgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaatttggtatcccttcttatttgtttctaacatcaaatgttggttt |
29701149 |
T |
|
| Q |
117 |
tttaagtctcatgctttcccttaaacaacgtaaaattgaagatgttttcgatgattccgaccgtgatcatcagttgttgaatattcctggtatctcaaat |
216 |
Q |
| |
|
||||||||||||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29701150 |
tttaagtctcatgctttcccttaaaaaccgccaaatcgaagaagttttcgatgattccgaccgtgatcatcagttgttgaatattcctggtatctcaaac |
29701249 |
T |
|
| Q |
217 |
caagttccttctaatgttttacctgatgcttgttttaataaagatggtggatatgttgcttattataaactagctgagaggtttagaaacaccaaaggga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29701250 |
caagttccttctaatgttttacctgatgcttgttttaataaagatggtggatatattgcttattataaactagctgagaggtttagagacaccaaaggga |
29701349 |
T |
|
| Q |
317 |
ttattgttaataccttttcagatttggaacaatcttctattgatgcattatatgatcatgatgagcaaatccctcctatctatgctgttggt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29701350 |
ttattgttaataccttttcagatttggaacaatcttctattgatgcattatatgatcatgatgagaaaatccctcctatctatgctgttggt |
29701441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 29678599 - 29678981
Alignment:
| Q |
17 |
ttgttgggttagtcctagatttcttttgtgtttcaatgattgatgttggaaatgaatttagtatcccttcttatttgtttctaacatcaaatgttggttt |
116 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
29678599 |
ttgttggtttagtcctagatttattttgtctttcaatgattgatgttggaaatgaacttggtatcccttcttatttgttcctaacatcaaatgttggatt |
29678698 |
T |
|
| Q |
117 |
tttaagtctcatgctttcccttaaacaacgtaaaattgaagatgttttcgatgattccgaccgtgatcatcagttgttgaatattcctggtatctcaaat |
216 |
Q |
| |
|
|||| | |||||||||||||| || | ||| | | || || || ||| |||||| ||||| | ||||||||| |||||||| | ||||| |
|
|
| T |
29678699 |
tttaggattcatgctttcccttcaaaaccgtcgagtagacgacgtgttcaatgatta------tgatcctgagttgttga---ttcctggttttacaaat |
29678789 |
T |
|
| Q |
217 |
caagttccttctaatgttttacctgatgcttgttttaataaagatggtggatatgttgcttattataaactagctgagaggtttagaaacaccaaaggga |
316 |
Q |
| |
|
||| ||||||| |||||||||| ||||| || || ||||||||||| |||| || ||||| || || ||| ||| | | |||||||||| | |
|
|
| T |
29678790 |
ttagtaccttctagtgttttacctaatgctgcttatagcaaagatggtggttatgaagcctattacaaccttgctcggagaatcaacgacaccaaaggaa |
29678889 |
T |
|
| Q |
317 |
ttattgttaataccttttcagatttggaacaatcttctattgatgcattatatgatcatgatgagcaaatccctcctatctatgctgttggt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29678890 |
ttattgttaataccttttcagatttggaacaatattctattgatgcattatatgatcatgatgaaaaaatccctcctatctatgctgttggt |
29678981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University