View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_30 (Length: 413)
Name: NF5918_low_30
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 42925920 - 42926307
Alignment:
| Q |
13 |
aatatttaccaaatgtaaaaagggagatatctcaaagtaaccaaaaatagatgaataaaaccaaatggtccttattttttaatgaaatgattttagagca |
112 |
Q |
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| T |
42925920 |
aatatttaccaaatgtaaaaagggagatatctcaaagtaaccaaaaatagatgaataaaaccaaatggtccttattttttaatgaaatgattttagagca |
42926019 |
T |
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| Q |
113 |
atgccctctgaattacttccatcgtattacaaccattagacacattaacctctgttgctgaaacacaagaaaacaactataaaaggtacaatgctgaatg |
212 |
Q |
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| T |
42926020 |
atgccctctgaattacttccatcgtattacaaccattagacacattaacctctgttgctgaaacacaagaaaacaactataaaaggtacaatgctgaatg |
42926119 |
T |
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| Q |
213 |
atgctttatatcataattttattgttccttgttgaagaaagtaaccaaatcctctgcatcatcatagcttctaattagtgaatcatcacacaaataaagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926120 |
atgctttatatcataattttattgttccttgttgaagaaagtaaccaaatcctctgcatcatcatagcttctaattagtgaatcatcacacaaataaagt |
42926219 |
T |
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| Q |
313 |
ggtccttcttcnnnnnnntgtcatatttgcttgagtaacaggaatatcataatattgttcaccatgcatcctaaccgatgcaataactg |
401 |
Q |
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| T |
42926220 |
ggtccttcttc-aaaaaatgtcatatttgcttgagtaacaggaatatcataatattgttcaccatgcatcctaaccgacgcaataactg |
42926307 |
T |
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