View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_31 (Length: 410)
Name: NF5918_low_31
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 3238779 - 3239162
Alignment:
| Q |
12 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
111 |
Q |
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| T |
3238779 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
3238878 |
T |
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| Q |
112 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
211 |
Q |
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| T |
3238879 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
3238978 |
T |
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| Q |
212 |
gttttcgatannnnnnncaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
311 |
Q |
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| T |
3238979 |
gttttcgatatttttttcaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
3239078 |
T |
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| Q |
312 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaatt |
395 |
Q |
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| T |
3239079 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaatt |
3239162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
47 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
120 |
Q |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 395
Target Start/End: Original strand, 3243141 - 3243306
Alignment:
| Q |
229 |
caggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatttta---attttcctaaa |
325 |
Q |
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||||||||||||||||||||||||||||| | |||||||| | |||||||||||||| |||||| || | ||||| || ||| ||||| ||||| |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaa |
3243240 |
T |
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| Q |
326 |
gggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaatt |
395 |
Q |
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| T |
3243241 |
gactggaaaaga----tatgtaaatcttgagttggctcttactaatcaagccaatgccttgctcacaatt |
3243306 |
T |
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