View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_33 (Length: 392)
Name: NF5918_low_33
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 21658302 - 21658675
Alignment:
| Q |
1 |
tcatcatactcagtgatcacctccctttgataatttactggggatatacctaagatataataatttgattaattaaaatatttatattatcttcttttca |
100 |
Q |
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| T |
21658302 |
tcatcatactcagtgatcacctccctttgataatttactggggctatacctaagatataataatttgattaattaaaatatttatattatattcttttca |
21658401 |
T |
|
| Q |
101 |
aaagaaaaattcgaaagaagtaaatcgctattaacataagtgacattaatgattattttacaacgatgttttagagcatttaaaaaacaggcgatgcaat |
200 |
Q |
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| T |
21658402 |
aaagaaaaattcgaaagaagtaaatcgctattaacataaatgacattaatgattattttacaacgatgttttagggcatttaaaaaacaggcgatgcaat |
21658501 |
T |
|
| Q |
201 |
caaaatcccggcgagagccatgacctagagagagaaggtatacttaccaggcaaaaaattaaagatgagtttggtaccaacccctccatccccttcaatt |
300 |
Q |
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| T |
21658502 |
caaaatcccagcgagggccgtgacctagagagagaaggtatacttaccaggcaaaaaattaaagatgagtttggtaccaacccctccatccccttcaatt |
21658601 |
T |
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| Q |
301 |
acttgcacatctttcacaatatttggtagaacctttggaacaactatggtgatatccttggcctgagcagccca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
21658602 |
acttgcacatctttcacaatatttggtagaacctttggaacaactaaggtgatatccttggactgagcagccca |
21658675 |
T |
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